PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG348200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 187aa    MW: 19609 Da    PI: 4.9244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG348200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162373156
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                         + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+ +l+g+
  Pavir.9KG348200.1.p 23 PVYRGVRLR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAASALRGA 73
                         68****975..6*********66.....68*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-112372IPR001471AP2/ERF domain
SMARTSM003803.2E-232486IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-172481IPR016177DNA-binding domain
PROSITE profilePS5103218.42480IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252481IPR001471AP2/ERF domain
CDDcd000187.79E-152582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQQRRPEEQ RAGRRARAVT RHPVYRGVRL RAGKWVSEIR ELRKPSRIWL GTYPTPEMAA  60
AAYDAAASAL RGAGAALNFP DAARSLPAPA SASPEDVRAA AAEAAAAMDG CLRHRDEPRG  120
DGGGGGGGGA DDAVAIVDED DLFEMPRLMM SMAEGLMMSP PVLGPTAAAV ASMDADEEGV  180
SLWDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1222801272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG348200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796862.16e-76dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI43e-43DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-43DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A3L6TRL14e-80A0A3L6TRL1_PANMI; Uncharacterized protein
STRINGPavir.Ib02495.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-22ERF family protein
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]