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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.9KG340200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
Trihelix |
Protein Properties |
Length: 263aa MW: 29042 Da PI: 10.9809 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9KG340200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 46.6 | 8.8e-15 | 16 | 92 | 14 | 86 |
trihelix 14 rremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
r++++e+lr+g+l++++W++v++++ + +s +qC++k+e+l+kry++++ ++ +r++ + ++p+f l+
Pavir.9KG340200.1.p 16 RSNRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSK--EPKWPFFPLLH 92
7899*********************998888788899*************************9844..447****9886 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MGRPMKAHRS NRPVNRSNRW EALRKGNLRA ADWDDVANAV TARCGRFPTA TPKSGVQCRH 60 KIEKLRKRYR AERSRSAGRS KEPKWPFFPL LHDLAGGGVP DPSPNAIVKI KTKGPVPPAS 120 TPSPVSSPSS EEAVRSRSLH GLISNGGAGS GLRFTIPKAS RSRPAAVAAF NPERNHGEDD 180 AESEAMAEVA DALRAVGERF LRMEERRLEL SLQMEKERME SEMKRTQSML DAQQLFLEAF 240 LGKQQQHKKA RLSPASTAME ED*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040727 | 0.0 | BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds. |
GenBank | EU959937 | 0.0 | EU959937.1 Zea mays clone 220734 mRNA sequence. |
GenBank | KJ727852 | 0.0 | KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G54390.1 | 4e-16 | sequence-specific DNA binding transcription factors |