PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG319000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26300.7 Da PI: 8.0312 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.1 | 9.2e-21 | 98 | 194 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn+YA+++GFs+ +++s++sk+ +e tk+ +v k g +++ek + +++rr+ ++r++C a++ v+k++ g+wev ++ Pavir.9KG319000.1.p 98 DYYNSYARHTGFSIWIDTSHESKKANEKTKYIYVWPKAGVNKKEKVAddgpiieekIVRQRRRDYVDRMHCPARMIVRKTSPGHWEVVNF 187 69*****************************************99999*****99888999999************************** PP FAR1 82 eleHnHe 88 e eHnHe Pavir.9KG319000.1.p 188 EREHNHE 194 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-19 | 98 | 194 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MCVAGGAGAH VSSSNLTLPV ISNETLHLPS NSAPPELATQ QLSNSASKVL PAESGGVTVP 60 TAETTADGVD VEDGVEVLST PQEPFVDMFF NTSDAAKDYY NSYARHTGFS IWIDTSHESK 120 KANEKTKYIY VWPKAGVNKK EKVADDGPII EEKIVRQRRR DYVDRMHCPA RMIVRKTSPG 180 HWEVVNFERE HNHERLRKFL LTKYLKSHRD IPAEEKEFIK WLHGCCKLSI HRR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG319000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6TA85 | 1e-105 | A0A3L6TA85_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J26914.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG319000.1.p |