PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9KG303900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 563aa MW: 62971.8 Da PI: 4.5613 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 412.5 | 3.9e-126 | 193 | 562 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL++cAea+s+ + +aq+++a+l++ ++ +gdp qR+aay++e+Laa++++s++++y+al+++e++ + +l+a+++++e++P++ Pavir.9KG303900.1.p 193 KQLLFDCAEAISEYSVDEAQSIIAELRQKVAIQGDPSQRIAAYLVEGLAATIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCF 279 589*****************************************************************9...89999************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 ++++++aN Ilea +gee vHiiDfdi+qG Q+++L+q L + +++p lRiTgv++ es+ l+ +g+rL+k+Ae +gvpfef+ Pavir.9KG303900.1.p 280 RLGFMAANYSILEACKGEEVVHIIDFDINQGSQYITLIQFLRNNSNKPCLLRITGVDDLESVnrAVGGLKVVGQRLEKLAEDCGVPFEFR 369 **********************************************************9999888899********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + va+++ed+++ +L++++gEal+Vn+++ lh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e +yysalfd Pavir.9KG303900.1.p 370 T-VASNIEDVTPGMLDCRTGEALIVNFAFLLHHLPDESVSMVNERDQLLRMVKGLRPKLVTMVEQDANTNTTPFLARFREVYDYYSALFD 458 *.7*************************************************************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 sl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+++++ + +k+ll+ + + yr e+ + l Pavir.9KG303900.1.p 459 SLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFVPSPFNSNVIDGIKSLLKSYCD-KYRFEKVYDGLH 547 ***************************************************************************95.5*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 +gW d++Lv+ SaW+ Pavir.9KG303900.1.p 548 FGWGDKTLVVSSAWQ 562 **************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.298 | 166 | 543 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-123 | 193 | 562 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 563 aa Download sequence Send to blast |
MSFIRQADPS ASCAESPYIH KFGPPGSVFP AQRFASGKEL LHHGPQPYKS EGYRQSDFNG 60 TAAHVFQNSF YNTDSHVESH FNEATCSPAI SNVSQQNSQS LSDNQTSDLE VEFDEDEMRL 120 KLQELEHALL DDGDEIFSDL SGIIDDEWND SMKNNDWTNT MKNIMSPDSP KESSLESSLC 180 CPDSNNGEAR SPKQLLFDCA EAISEYSVDE AQSIIAELRQ KVAIQGDPSQ RIAAYLVEGL 240 AATIQSSGKG IYRALRCKEA PTLYQLSAMQ ILFEICPCFR LGFMAANYSI LEACKGEEVV 300 HIIDFDINQG SQYITLIQFL RNNSNKPCLL RITGVDDLES VNRAVGGLKV VGQRLEKLAE 360 DCGVPFEFRT VASNIEDVTP GMLDCRTGEA LIVNFAFLLH HLPDESVSMV NERDQLLRMV 420 KGLRPKLVTM VEQDANTNTT PFLARFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA 480 REIVNILACE GPDRVERYEV AGKWRARMTM AGFVPSPFNS NVIDGIKSLL KSYCDKYRFE 540 KVYDGLHFGW GDKTLVVSSA WQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-58 | 199 | 561 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-58 | 199 | 561 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.16743 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9KG303900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807214.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A3L6RAQ6 | 0.0 | A0A3L6RAQ6_PANMI; Scarecrow-like protein 1 | ||||
STRING | Pavir.J01797.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9KG303900.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|