 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9KG266900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 297aa MW: 32516.3 Da PI: 4.7568 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG266900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.8 | 4.3e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
Pavir.9KG266900.1.p 70 KKRRLAADQVRALERSFEVDNKLDPERKARIAHDLSLHPRQVAVWFQNRRARWK 123
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 125 | 3.4e-40 | 69 | 161 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrl+++qv++LE+sFe ++kL+perK+++a++L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++++L++e
Pavir.9KG266900.1.p 69 EKKRRLAADQVRALERSFEVDNKLDPERKARIAHDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRAECDALRRDKDTLAAE 158
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
++e
Pavir.9KG266900.1.p 159 IRE 161
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MKRPTSRGSS MVSQATTDQQ EDSCRYMERH GVDGDGGAAA AERDDMEAGA YDEEDDDDEQ 60
AGSRGGLGEK KRRLAADQVR ALERSFEVDN KLDPERKARI AHDLSLHPRQ VAVWFQNRRA 120
RWKTKQIERD FAALRARHDA LRAECDALRR DKDTLAAEIR ELREKVERQM DVKLESAEEM 180
LPVAAGTAAA AAAAAVYKDG STDSDSSAVF NEEASPYSGA AFDHQHQHQF HPSFTSFTSF 240
LASSSSLSSS FPSSLYHGVS HLDQEADGFL SATAADGFFA EEQGAGLGSW YGSEGW*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 117 | 125 | RRARWKTKQ |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042027 | 0.0 | BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds. |
| GenBank | KJ727556 | 0.0 | KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds. |
