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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG253200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1026aa MW: 113989 Da PI: 5.5888 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.2 | 1.6e-53 | 21 | 138 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+ee Pavir.9KG253200.1.p 21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEE 110 45559************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n +fqrr+yw+Lee++ +ivlvhyle+k Pavir.9KG253200.1.p 111 NINFQRRTYWMLEEDFMHIVLVHYLETK 138 *************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.32 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.3E-71 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.7E-48 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.9E-6 | 446 | 533 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 6.8E-17 | 447 | 533 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 9.9E-7 | 447 | 525 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 5.29E-16 | 639 | 741 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.0E-17 | 642 | 743 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.78E-12 | 642 | 739 | No hit | No description |
PROSITE profile | PS50088 | 8.843 | 648 | 680 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.096 | 648 | 713 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 681 | 713 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.78E-8 | 840 | 893 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.086 | 842 | 864 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 843 | 872 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0032 | 844 | 863 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 865 | 887 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 866 | 890 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 868 | 887 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1026 aa Download sequence Send to blast |
MASAEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS 180 EYEEAESDIY SGGAGYHSFT GMQQHENGTG PVIDSSVFSP YTPASSIGNY QGLHPMTQNT 240 SFYPGNQHSS LVLNGSSTGV ATNGYANQTD PTSWNPVIEL DNGPVQMPLQ FPVPPEQGTS 300 TEGLGIDYLT FDEVYSDGLS LKDIGAAGAS GESFWQFPGA TGDLSAPESN FPQPNDGSLE 360 AAIGYPFLKT QSSNLSDILK DSFKKTDSFT RWMSKELLEV EDSQIQSSSG AYWSTEEADS 420 IIEASSREPL EQFTVSPMLS QDQLFSIVDF APTWTYVGSK TKILVTGSFL NNSKVTERCK 480 WSCMFGEVEV PAKILADGTL LCYSPQHKPG RVPFYITCSN RLACSEVREF EFRPTVTQYM 540 DAPSPHGATN KVYFQIRLDK LLSLGPDEYQ ATVSNPSLEM IELSKKISSL MASNDEWSNL 600 LKLAVDNEPS TDDQQDQFAE NLIKNKLHVW LLNKVSVGGK GPSVLDDEGQ GVLHLAAALG 660 YDWAVRPTLA AGVNINFRDV HGWTALHWAA FCGRERTVVA LIALGAAPGA LTDPYPDFPE 720 STPADLASAN GQKGISGFLA ESSLTSHLQA LNLKEANMAE ISGLPGIGDV TERDSLQPPS 780 GDSLGPVRNA AQAAARIYQV FRVQSFQRKQ AAQYEDDKGG LSDERALSLL SVKPSKPGQL 840 DPLHSAATRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI 900 LRWRRRGAGL RGFRSTEAST EGSSGGTRSN MIKDKPSGDD YDFLQEGRKQ TEERLQKALA 960 RVKSMAQYPE ARDQYQRILT VVSKMQESQA MQEKMLEESA EMDDGYFMNE LQELWDDDTP 1020 LPGYF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7063 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG253200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793388.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X2 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A3L6TUJ2 | 0.0 | A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2 | ||||
STRING | Pavir.Ia02749.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG253200.1.p |