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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9KG233700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WRKY |
| Protein Properties |
Length: 435aa MW: 46093.3 Da PI: 6.4346 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG233700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 97.1 | 1.2e-30 | 199 | 257 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
Pavir.9KG233700.1.p 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 257
699************************998****************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 435 aa
Download sequence Send
to blast |
MCDFFWLSPA DQGDLSDVVR ASLQQQQPPP HLRLPATPAA VCSHGSRHLL EEEEAQLLLQ 60
GRVNLRDDDH EAHLPLLHGN GGMGLVVGSN AAVYPQHHPE AEGLAIPQLI MSGPPPQPQL 120
CASSSSFAER GDDAAANAPA APEELAGLDT AMAAAHPHAG PSIKRRKSQT KKVVCIPAPV 180
AAPPGVGGRA STSGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR 240
TDPSMLVITY TSDHNHPWPT QRNALAGSIR PPASSAKSHH HHHRSSAAAD AVPDPTPPPH 300
RHAGNVAVAD NCNATPPVAG SITASVRHHL LLKQEVLDTD NLEPSLLDAA ADHDLGGMIA 360
DVDGALNALC ASSFVHYSEK QQQYGTAGHP EELPEEEDKQ LLLDRDPFSF SFFDWVGASF 420
GVGEAAAANK GGYS*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC018727 | 4e-83 | AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence. |
| GenBank | AP014966 | 4e-83 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 4e-83 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
| GenBank | KC954610 | 4e-83 | KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds. |
