PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG182300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91872.7 Da    PI: 6.0062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG182300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182885457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Pavir.9KG182300.1.p 28 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85
                         6789***************************************************996 PP
2START155.44.5e-491643712204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++ +W ++++  e+   +  g  g
  Pavir.9KG182300.1.p 164 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTVSHGCRGVAARACGLVNLEPTKIVEILKDRP-CWFRDCRGLEVFTMLPAGngG 252
                          789*******************************************************9999999999.*******9999999999999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++++a+++lvp Rdf+++Ry+ +l++g++v++++S++     ++    +++vRae+lpSg+l++++++g+s v +v+h dl+++
  Pavir.9KG182300.1.p 253 TIELVSMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGGGQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAW 342
                          *******************************************987777667799*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s+++ ++k+++a+l++ +
  Pavir.9KG182300.1.p 343 SVPEVLRPLYESSRVVAQKMTTAALRYIR 371
                          *************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-19785IPR009057Homeodomain-like
PROSITE profilePS5007115.582286IPR001356Homeobox domain
SMARTSM003898.9E-172490IPR001356Homeobox domain
SuperFamilySSF466891.37E-162788IPR009057Homeodomain-like
CDDcd000863.79E-172787No hitNo description
PfamPF000462.4E-162885IPR001356Homeobox domain
CDDcd146863.76E-679118No hitNo description
PROSITE profilePS5084826.686154382IPR002913START domain
CDDcd088752.14E-68158374No hitNo description
SMARTSM002346.0E-36163373IPR002913START domain
Gene3DG3DSA:3.30.530.209.8E-18163355IPR023393START-like domain
SuperFamilySSF559612.2E-32163375No hitNo description
PfamPF018527.1E-47164371IPR002913START domain
PfamPF086701.4E-47695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPS SARRQQLLRE  60
CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNPSLTNDT SCESHVTTPA NLRDASNPSG LLSIAEETLT EFLSKATGTA  180
IDWVQMPGMK PGPDSFGIVT VSHGCRGVAA RACGLVNLEP TKIVEILKDR PCWFRDCRGL  240
EVFTMLPAGN GGTIELVSMQ MYAPTTLVPA RDFWTLRYTT TLEDGSLVVC ERSLSGSGGG  300
QSTATAQQFV RAEMLPSGYL VRQCEGGGSI VRIVDHLDLD AWSVPEVLRP LYESSRVVAQ  360
KMTTAALRYI RQIAQETSGE VVYPLGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSVMGG  420
DGIEDVIIAC NSKKIKNSSN PASAFGAPGG IICAKASMLL QGVPPAVLVR FLREHRSEWA  480
DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIVMPLAHTV ENEEILEVVR LEGQALTHDE  540
GVLSREIHLL QLCTGFDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDIKTDGVP  600
SGRTLDLASS LEVGTTAQHA SGDGSQDDCN LRSVLTIAFQ FPYEIHLQDS VAAVARQYVR  660
SIVSAVQRVS MAISPSRSGL STGQKIISGF PEAATLVRWI CQSYQYHLGV DLVSHSDEAG  720
ESLLRMFWDH QDAVLCCSFK EKPVFTFGNQ MGIDMLETTL IALQDLTLDK IFDEAGRKAL  780
HAEIPKLMEQ GYAYLPPGVG LSGMGRHVSY EQAVAWKVLG DDSNVHCLAF CFVNWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.21270.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG182300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796396.10.0homeobox-leucine zipper protein HOX9
RefseqXP_025796397.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2T7C5J00.0A0A2T7C5J0_9POAL; Uncharacterized protein
STRINGPavir.Ia01697.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein