PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG169000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 438aa    MW: 45248.7 Da    PI: 8.006
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-3991150261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++
  Pavir.9KG169000.1.p  91 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKHA 150
                          78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3184148IPR003851Zinc finger, Dof-type
PfamPF027014.7E-3292149IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.98495149IPR003851Zinc finger, Dof-type
PROSITE patternPS01361097133IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVVESAGGGG GDCLIKLFGK TIPVPEAAAD KESGGSSSIS SSTESDTPEN ASEPSPQPEV  60
VDADDPKSSP ETPPPTGAGD LAGQREKLKK PDKVLPCPRC NSMDTKFCYF NNYNVNQPRH  120
FCKNCQRYWT AGGAMRNVPV GAGRRKNKHA AAAAAASHFL HRVRAAAAAG GDPLIKANAT  180
VLSFGGHGHG HGALQDLAEQ ETHLKEKLLV VPARNAGNPP SSVGPCSEGS NSTDDMAAHG  240
GGIKDKPTTV DRPASMNNGA TVWPYGGCAP SPAAYFPSGI AIPIYPAAPG YWGCMIPPGP  300
WSLPWPVQGL SSPTGAPSLS SLGPPDPLTL GKHPREGDEG RSAVHGGGKV WAPKTIRIDD  360
ADEVARSSIW SLIGIKGDKA KQDGADHHAA AGHKHGGTVF EQKREAKKPA MIAASSPPLL  420
HANPVALTRS VTFQEGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.127610.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG169000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567841e-101EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.
GenBankJX4284591e-101JX428459.1 Zea mays subsp. mays clone pUT3054 DOF40 C2C2-DOF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797411.10.0cyclic dof factor 1-like
TrEMBLA0A3L6TIZ10.0A0A3L6TIZ1_PANMI; Cyclic dof factor 1-like
STRINGPavir.Ib03509.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.12e-54cycling DOF factor 3