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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG142600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 229aa MW: 23993.1 Da PI: 10.4142 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.7 | 1.1e-41 | 111 | 178 | 104 | 170 |
YABBY 104 nedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Pavir.9KG142600.2.p 111 AKQEASPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 178 5678899999879*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.9E-39 | 112 | 178 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-8 | 120 | 172 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-4 | 127 | 170 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRGLLFPGTP TTNTAAAAAP TEITSTTTTI TTAPPPPASS ANNGQFHFPH PLNQLAPNPP 60 HQSLLDEISS ANPSLQLLEQ HGLGGLIPGG RNAAAPPPPP PLAAAGNNKG AKQEASPRAN 120 PVVNRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP 180 DHQQGLKKTS LLPQDHHQRK DGLLIKDGLY AAAAAAAAAA ANMGVAPY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG142600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971153 | 1e-139 | EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796914.1 | 1e-106 | protein YABBY 3-like | ||||
Swissprot | Q8L556 | 4e-74 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A2S3IKW5 | 1e-105 | A0A2S3IKW5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2S3IKX6 | 1e-105 | A0A2S3IKX6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib03707.1.p | 1e-163 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 6e-43 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG142600.2.p |
Publications ? help Back to Top | |||
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