PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG142600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 316aa    MW: 32936.4 Da    PI: 9.0173
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY77.83.4e-244492654
                YABBY  6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54
                         ++eq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++   
  Pavir.9KG142600.1.p 44 AAEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 92
                         689***************************************9998765 PP
2YABBY133.92e-41198265104170
                YABBY 104 nedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           ++e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Pavir.9KG142600.1.p 198 AKQEASPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 265
                          5678899999879*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-2545102IPR006780YABBY protein
PfamPF046901.6E-38199265IPR006780YABBY protein
SuperFamilySSF470958.25E-8207259IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.8E-4214257IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSSSSSSSA ASTAAVFPPS PPPLLVENLP PLHQLTPVAA APPAAEQLCY VHCHFCDTVL  60
VVSVPTSSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTTN TAAAAAPTEI TSTTTTITTA  120
PPPPASSANN GQFHFPHPLN QLAPNPPHQS LLDEISSANP SLQLLEQHGL GGLIPGGRNA  180
AAPPPPPPLA AAGNNKGAKQ EASPRANPVV NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP  240
DISHREAFSA AAKNWAHFPH IHFGLMPDHQ QGLKKTSLLP QDHHQRKDGL LIKDGLYAAA  300
AAAAAAAANM GVAPY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG142600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796914.11e-163protein YABBY 3-like
SwissprotQ8L5565e-97YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A2S3IKW51e-162A0A2S3IKW5_9POAL; Uncharacterized protein
STRINGPavir.Ib03707.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-42YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]