PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG142600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 316aa MW: 32936.4 Da PI: 9.0173

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG142600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	77.8	3.4e-24	44	92	6	54
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 ++eq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++ Pavir.9KG142600.1.p 44 AAEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 92 689***************************************9998765 PP
2	YABBY	133.9	2e-41	198	265	104	170
YABBY 104 nedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Pavir.9KG142600.1.p 198 AKQEASPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 265 5678899999879*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-25	45	102	IPR006780	YABBY protein
Pfam	PF04690	1.6E-38	199	265	IPR006780	YABBY protein
SuperFamily	SSF47095	8.25E-8	207	259	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.8E-4	214	257	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSSSSSSSSA ASTAAVFPPS PPPLLVENLP PLHQLTPVAA APPAAEQLCY VHCHFCDTVL 60 VVSVPTSSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTTN TAAAAAPTEI TSTTTTITTA 120 PPPPASSANN GQFHFPHPLN QLAPNPPHQS LLDEISSANP SLQLLEQHGL GGLIPGGRNA 180 AAPPPPPPLA AAGNNKGAKQ EASPRANPVV NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP 240 DISHREAFSA AAKNWAHFPH IHFGLMPDHQ QGLKKTSLLP QDHHQRKDGL LIKDGLYAAA 300 AAAAAAAANM GVAPY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269\|PubMed:17216490}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG142600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796914.1	1e-163	protein YABBY 3-like
Swissprot	Q8L556	5e-97	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A2S3IKW5	1e-162	A0A2S3IKW5_9POAL; Uncharacterized protein
STRING	Pavir.Ib03707.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	6e-42	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG142600.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]