PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG129600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 714aa    MW: 73585.7 Da    PI: 9.8172
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG129600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix971.7e-30102186187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+l+L+++r+em+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke+  +r  ++ +t+++f+qlea
  Pavir.9KG129600.3.p 102 RWPRQETLELLKIRSEMDATFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESHAGR--NDGKTYRFFSQLEA 186
                          8********************************************************************97..56668*******85 PP
2trihelix109.62e-34495580187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Pavir.9KG129600.3.p 495 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYNRNAKRCKEKWENINKYFKKVKERNKKR-PEDSKTCPYFHQLDA 580
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-499161IPR001005SANT/Myb domain
CDDcd122031.67E-27101166No hitNo description
PROSITE profilePS500906.737101159IPR017877Myb-like domain
PfamPF138373.7E-21101187No hitNo description
PRINTSPR012174.7E-9395411No hitNo description
PRINTSPR012174.7E-9415427No hitNo description
PRINTSPR012174.7E-9434455No hitNo description
PRINTSPR012174.7E-9469485No hitNo description
SMARTSM007170.0093492554IPR001005SANT/Myb domain
PfamPF138374.8E-24494581No hitNo description
PROSITE profilePS500907.155494552IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-4494551IPR009057Homeodomain-like
CDDcd122035.22E-29495559No hitNo description
PRINTSPR012174.7E-9624636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MQQQQHGRGG GGGGGGGGPA QQFGAQQVEM PPPFSPAGGA GQRISLAEAP SPISSRPPAP  60
APAQQYDELG ASSAGGGGFD AEGLAAAAAG EEGASGGSAG NRWPRQETLE LLKIRSEMDA  120
TFRDATLKGP LWEQVSRKLA EKGYTRSAKK CKEKFENVHK YYKRTKESHA GRNDGKTYRF  180
FSQLEALHGT AGGAGGGPPA PVASLVPPVA SSVGVSGAAG PSAVRVPAET PPAVAAGGAG  240
MPAMAFGNQM SISTSNTEDY SDDEDSDDEG TQELGGGADE RGKRKRVSSA GGGGGGCGKM  300
MRFFEGLMKQ VMERQEAMQQ RFLEAIEKRE QDRMIREEAW RRQEMTRLAR EQEILAQERA  360
MAASRDAAVL SFIQKITGQT IPMPSIAAPT ISAMPPPSHP KPPPPQPHPT PIASASPAAP  420
PPAPHPPVAS QPPPAAQQPQ PSPQQQRSPI PATPQAPATQ QKQSTDIVMT PAETPHADTP  480
GGHDGSGGGG PTSSRWPKAE VHALIQLRSN LDTRYQEAGP KGPLWEEISA GMRRMGYNRN  540
AKRCKEKWEN INKYFKKVKE RNKKRPEDSK TCPYFHQLDA LYRNKAALMS SSGAGGGGGP  600
AAHASGAPPT QQPQETVTVT AAAPISQTPP PPPTTTLPSP SSQHAAKNGG GSNNAGSGNG  660
GGASERGASG GGSGATQAQA SNGSVAASRF FGEGGAGAGV SGSAAKKVSQ PAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33020.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG129600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612050.0BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794485.10.0trihelix transcription factor GTL1-like isoform X2
SwissprotQ391171e-63TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2T8I1S40.0A0A2T8I1S4_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-50Trihelix family protein