PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG111200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 28699.8 Da PI: 8.7794 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Pavir.9KG111200.1.p 90 FKCNYCQRKFYTSQALGGHQNAH 112 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.16E-7 | 87 | 117 | No hit | No description |
PROSITE profile | PS50157 | 11.572 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDKESSSLTA SMEVEGAGLQ VEDGEEVVQA PAKELDLIGA LGSAPPEVKA VEAQAVAPGK 60 GKEKAVVEAA EEKAPTTAPA SSGGEKKRSF KCNYCQRKFY TSQALGGHQN AHKRERSLAK 120 HAAAAAAAAG RGLYGGADPF LPPHHLRFPH AWPYSAGGGG GRTSSSSSLG LGRGSAAAAP 180 FYGRQHGWAA HAHAHGGQPS MPGLARHAGA ERPVYAPHGY GGYGASSRAP ASPAVLDTGM 240 AGLRWAGVAS GASAGVNNGG AHDVTQQQEE AQSCKIDLNL RL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG111200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822315.1 | 1e-136 | zinc finger protein GIS3-like | ||||
TrEMBL | A0A2S3I1W9 | 1e-135 | A0A2S3I1W9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D5Q3 | 1e-135 | A0A2T7D5Q3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04043.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13064 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 9e-16 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG111200.1.p |