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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.9KG105000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 386aa MW: 43518 Da PI: 9.0736 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.9KG105000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 110 | 153 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT e+d++l ++++ +G++ W+ Iar++ +t+kqc++rw +
Pavir.9KG105000.1.p 110 KWTYEDDKKLRELIECHGNRAWSIIAREFS-SKTGKQCRERWVNN 153
8*****************************.***********986 PP
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2 | Myb_DNA-binding | 50.2 | 5.9e-16 | 160 | 202 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
r +WT+ E +llv+++k+lG++ W++Iar+++ gR+++++k+ w+
Pavir.9KG105000.1.p 160 RTAWTEAELLLLVECHKKLGKK-WSKIARKIP-GRSENSIKNQWY 202
679*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MAVRMGEKRS MFHKMFEKEY QYALGQQDVD TMHGTLAREV VGQAINFGVG DYGTPWQGAL 60 GFTGHWGDPI QEAPIGEYYG QMIGSMALHN EVGKAYAGTS SVVNNAIGRK WTYEDDKKLR 120 ELIECHGNRA WSIIAREFSS KTGKQCRERW VNNRDPKIKR TAWTEAELLL LVECHKKLGK 180 KWSKIARKIP GRSENSIKNQ WYAAKRSLKA KRKNIKKDDR PGIIEDYMRT LKKKGKNMVN 240 EVTVPFRGSN FAASSQVPES SDNPLPPPPM SAPFLGLNVN VGDHFTPEAM YDDPIFTDKH 300 QPFAYPQDTE ESGYLPSPYV LVAGHPFAED HQAGGYHSQL QFHQLPTSVQ QEQAFSNYRA 360 TEDPNQVFAG RYFHEAIRGQ QSGDG*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1a5j_A | 4e-27 | 111 | 201 | 10 | 100 | B-MYB |