 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9KG104000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
LBD |
| Protein Properties |
Length: 242aa MW: 24656.8 Da PI: 7.1744 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG104000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.8 | 9.2e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++
Pavir.9KG104000.1.p 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNW 91
6*********************9999888899********************************************************** PP
DUF260 86 qleqlkaelallke 99
+l+q++a+++l++e
Pavir.9KG104000.1.p 92 DLCQAAADAVLRGE 105
*******9998776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL SAIPAAFTDR 120
DMDGLYGSVG AAASSSSPEN SSSAPSRKRG RNNNNGGLAF VNAAAAAAVP AAGACQNPPA 180
GLLQSCELDL CLTPASSPMA GSGRRGCGGA SDEYSATTTC EDLQATGDVE ARAPALLNLF 240
H*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288002 | 1e-161 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
