PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG101100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 74aa MW: 8234.39 Da PI: 9.8836 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.1 | 7.2e-06 | 52 | 70 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 C+ Cg++++ + nLk Hi Pavir.9KG101100.1.p 52 ACKRCGRCYTGQANLKAHI 70 6*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MVPARGRSPS PARRRNRHEG TAGVHAQVLL EAGNLVEEED AHLRKHLGKW WACKRCGRCY 60 TGQANLKAHI CDY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4606 | 1e-121 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG101100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Ib03955.1.p | 7e-48 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG101100.1.p |