PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG100900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 157aa    MW: 17458.6 Da    PI: 8.6655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG100900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-142741997
                         -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         p++f++++  k   s t++l +++g +++v++  +k+ +++vl+ GW +Fv+a+ ++e+ f++F+++++s+f   v ++
  Pavir.9KG100900.1.p  2 PNRFLKKFARK--LSGTIKLVSPNGSVYDVEV--TKRFNKVVLRHGWGDFVDAHYIEENNFLLFQHVENSTF--EVLIL 74
                         89999999755..6779***************..*******************************9999999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.338177IPR003340B3 DNA binding domain
CDDcd100171.37E-15175No hitNo description
PfamPF023622.1E-12274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-17279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-18279IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0041577IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPNRFLKKFA RKLSGTIKLV SPNGSVYDVE VTKRFNKVVL RHGWGDFVDA HYIEENNFLL  60
FQHVENSTFE VLILDSDGCE KVFSCAGIKN TRSVQDKIVD SVYISRSSFH DTTESSASER  120
LVRSEKGGSS YREKPVKIVA TSSSSESSGY TVYSVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG100900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.15e-84B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.15e-84B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.15e-84B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.15e-84B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.15e-84B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792776.16e-84B3 domain-containing protein Os03g0619600-like isoform X2
RefseqXP_025792777.16e-84B3 domain-containing protein Os03g0619600-like isoform X2
SwissprotQ851W53e-47Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A2T7C3Q82e-83A0A2T7C3Q8_9POAL; Uncharacterized protein
STRINGPavir.J20168.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-16B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]