PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG100600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 544aa    MW: 62035.1 Da    PI: 9.7657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15411201297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++ +v+p++f++++  k   s t++l +++g +++v++  +k+ +++vl+ GW +Fv+a+ ++e+ f++F+++++s+f   v ++
  Pavir.9KG100600.1.p  41 FKHSMVMPNRFLKKFARK--LSGTIKLVSPNGSVYDVEV--TKRFNKVVLRHGWGDFVDAHYIEENNFLLFQHVENSTF--EVLIL 120
                          3456**********9866..7779***************..*******************************9999999..66665 PP
2B338.81.7e-122643451698
                          EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          l +pk +a+++ ++ +  + +tl+   ++++W  ++  rk +++y+l++ W +Fv++n++++ D++++   +  ++f ++v ++r
  Pavir.9KG100600.1.p 264 LAIPKAYAAHFLHD-R--TNVTLQRpGKSKKWHPRFYQRKDKRMYMLRGQWLDFVRDNHVQVEDICILVPAEVgRRFMFTVYLLR 345
                          78******665444.3..36999995667*******76999999************************97766677777777766 PP
3B353.83.6e-17449540699
                          ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++dv+ + +++ l  +fa+ h +++++  +++l +   ++We k+ +r + +r +l +GW  Fv++ngL++gD+++F+l++++e +++v
  Pavir.9KG100600.1.p 449 MNADVTYRyHIMELGIRFAAPH-LPHRG--QIVLLQCMKKVWETKMVVRSGTRRWFLMGGWATFVRDNGLQVGDICLFELKKKEELTMKV 535
                          4666665558889999999888.34444..59**************9988888888889**********************99******* PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                          +++++
  Pavir.9KG100600.1.p 536 HIISR 540
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2128125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1929125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.56230123IPR003340B3 DNA binding domain
CDDcd100172.18E-1732121No hitNo description
SMARTSM010199.0E-933123IPR003340B3 DNA binding domain
PfamPF023621.4E-1341120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-13240345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14244343IPR015300DNA-binding pseudobarrel domain
CDDcd100175.83E-14248342No hitNo description
PROSITE profilePS508639.728249347IPR003340B3 DNA binding domain
SMARTSM010190.0085257347IPR003340B3 DNA binding domain
PfamPF023626.5E-11264346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-19434539IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-19437541IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.0E-9445541IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914445541IPR003340B3 DNA binding domain
CDDcd100171.26E-17445539No hitNo description
PfamPF023626.5E-15457540IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MARNGASRMK KPCDCCKRYL DHLDGKNQSM SCFLRHMTAN FKHSMVMPNR FLKKFARKLS  60
GTIKLVSPNG SVYDVEVTKR FNKVVLRHGW GDFVDAHYIE ENNFLLFQHV ENSTFEVLIL  120
DSDGCEKVFS CAGIKNTRSV QDKIVDSVYI SRSSFHDTTE SSASERLVRS EKGGSSYREK  180
PVKIVATSSS SESSGEDSLS EYESFWSDDL QTNPGPDYVL SRGSYLSGAQ EERVMALLQE  240
IQPESTVYIA VMRKCHIVKP GPYLAIPKAY AAHFLHDRTN VTLQRPGKSK KWHPRFYQRK  300
DKRMYMLRGQ WLDFVRDNHV QVEDICILVP AEVGRRFMFT VYLLRATATN SRGGTSFQRV  360
GPFHGRSSTK MASTVHIKEE SSDDNVSSQS DMDEASHKYL KSNSGGPSEA PYIVSSKSCL  420
SRSQKKIVEE KVRAIQSEVP IYVAIMKKMN ADVTYRYHIM ELGIRFAAPH LPHRGQIVLL  480
QCMKKVWETK MVVRSGTRRW FLMGGWATFV RDNGLQVGDI CLFELKKKEE LTMKVHIISR  540
EQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG100600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2T7C3Q80.0A0A2T7C3Q8_9POAL; Uncharacterized protein
STRINGPavir.J20168.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]