PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG099800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 478aa    MW: 53590.9 Da    PI: 9.4979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG099800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.22e-15191281797
                          .-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   7 psdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +s++ ++   +v++k +a e+     +++ +tle +   ++W  +l +r ++++y+l + Wk+Fv++n+Lk++D+++F+ ++ ++f+  v
  Pavir.9KG099800.1.p 191 KSSTKREnPAVVISKGYAVEYFPR--KTQIITLERPGCkKKWHPRLHIRPNRSGYILYGHWKNFVRDNKLKTNDICIFQPIKGKKFRVIV 278
                          44443332568**********744..55589999966569******99*******************************99989999999 PP

                          EEE CS
                   B3  95 kvf 97 
                          +++
  Pavir.9KG099800.1.p 279 HLL 281
                          876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-20176278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-20179281IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-17183279No hitNo description
SMARTSM010191.0E-9185284IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997186284IPR003340B3 DNA binding domain
PfamPF023621.4E-14189281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-11372474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-8373472IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-9378472No hitNo description
SMARTSM010190.018380474IPR003340B3 DNA binding domain
PROSITE profilePS508637.161380474IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MCYVACSHVQ SSGGSLIKSA FDRGFRFQIY MAGRSCPKNK SCHCYKRCVD HPDGMMKCLL  60
SHANSNRKHG TTIIQIFGSC CCNKDSSCAP TKNGIMVREG SANSIDTSKG SSDHASQSSA  120
NETPESLSSS EESEDSPSES QSSQLGHCKT STKLWIKSNK RDLTPEQEEK IDDLVKKIQP  180
QFPVLVVQMK KSSTKRENPA VVISKGYAVE YFPRKTQIIT LERPGCKKKW HPRLHIRPNR  240
SGYILYGHWK NFVRDNKLKT NDICIFQPIK GKKFRVIVHL LGEASTHSRS LRPRDSNNGC  300
ARKQSSAAHV HENSSSRDKL LQLNHRQHHR VAKDVCASDD SGEPSHPPPF VVLRHTSLTP  360
VQEKAVDEEV KAIQSDVPIF VANMSEEILG DNGTFSLDFA SRYAAPHFPD GKQTLTLSQD  420
GWRKAWHIKM LNRRVLPGEL GEFAVDNRLR TGDLCLFEPM KERLAMAVRI IRSEQYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG099800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2T7C3P50.0A0A2T7C3P5_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2959434