PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.9KG094400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 194aa MW: 19267.1 Da PI: 11.3247

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG094400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	62.9	6e-20	15	49	26	60
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + Pr+fC+aCrryWt GG+lrnvP+Gg++rk+ + Pavir.9KG094400.1.p 15 VLSPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 49 568****************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	16.656	1	49	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-15	17	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-9	18	46	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MPSDAKTIRA TALQVLSPRH FCRACRRYWT LGGSLRNVPI GGSTRKRPRL AHHHHQPPPA 60 ARRAPVFGLG LGGGVPPLPS SAQAGGLLGS LFALGATGPL LEGPAAPPLL EGRGAGFDLG 120 LGLPAGGTLG GGGGGPASGA SSSGLFWPAG LLDNDSVDPW KMLPSAAMWP DFSAAAAAAP 180 QTGGLLHGGA QLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG094400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	8e-52	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698063.1	1e-52	dof zinc finger protein DOF1.6
TrEMBL	A0A2T7C3R2	2e-61	A0A2T7C3R2_9POAL; Uncharacterized protein
STRING	Pavir.Ib03954.1.p	5e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-12	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG094400.1.p