PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG079800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 349aa    MW: 37373.2 Da    PI: 10.4197
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG079800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31282339359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Pavir.9KG079800.1.p 282 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 339
                          9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17232278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-33268339IPR003657WRKY domain
PROSITE profilePS5081129.998275341IPR003657WRKY domain
SuperFamilySSF1182907.06E-27278339IPR003657WRKY domain
SMARTSM007741.6E-37280340IPR003657WRKY domain
PfamPF031068.2E-27282338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRVLA LLSKPHDPAQ ARSIALGTDE ACAKFRKVVS LLSNGGAGVG  60
GEAGPSGTSG SHPRAKVVSR RQNPGFLTQK GFLDSNTPVV VLNSAHPSPS SAQVYPRTGA  120
LDAQSIHPLG GPPKLVQPLS AHFQFGNVSS RYQFPHQQQQ KLQAEMFKRS NSGINLKFDS  180
TSGTGTMSSA RSFLSSLSMD GSVASLDGKS SSFHLIGGPA MSDPVNAQQA PRRRCTGRGE  240
DGTGKCAVTG RCHCSKRSRK LRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSVR GCPARKHVER CVDDSSMLIV TYEGEHNHTR MPTQSAQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21268342275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.69911e-165callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG079800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795417.10.0protein WRKY1-like isoform X1
SwissprotQ93WU68e-93WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2S3IK150.0A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3I70.0A0A2T7C3I7_9POAL; Uncharacterized protein
STRINGPavir.Ib03991.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-65WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]