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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG074000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24057.4 Da PI: 9.3711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++rWT eE+ l +++++G g W+tI + R+ ++k++w++ Pavir.9KG074000.4.p 5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPEfsstlCYRSNVDLKDKWRN 55 79****************************999999978**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.061 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.40E-20 | 6 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 7.6E-16 | 119 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.47E-14 | 119 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.3E-10 | 120 | 184 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 19.79 | 122 | 189 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.7E-10 | 123 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGVPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVIV 60 GTSSSRDKGK TAVKKTRTTP KNNEHTTAIS TVTSDIDDEI VDDKPLASLP SEAQNASNPK 120 KSHSRLDNII MEAIKSLNEP TGSHITTIAN YIEEQYWPPS DFDHLLSAKL KDLATSGKLI 180 KKCRYYGTKG VRVCIYMPYL LKDACSCSGI HRQCL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15624 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG074000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679422 | 0.0 | HF679422.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB16 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796390.1 | 1e-124 | single myb histone 6 isoform X2 | ||||
Swissprot | C0HIA3 | 1e-114 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A2T8I1B5 | 1e-123 | A0A2T8I1B5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04118.1.p | 1e-130 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 7e-60 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG074000.4.p |
Publications ? help Back to Top | |||
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