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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG069000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 347aa MW: 36702.2 Da PI: 9.8609 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 97.9 | 1.1e-30 | 165 | 221 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF Pavir.9KG069000.1.p 165 DAPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 221 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-33 | 163 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.302 | 164 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.3E-28 | 167 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-22 | 167 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-22 | 198 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MMSFKGHEGL GQVAAGSQAS HVAAGAPLPW WAGPQLIYGE PAPLSPEETR RDGHFQVVPG 60 AQGGTPDPAP PAATKRGNPE VLKFSVFQGN LESGGKGDKN PEHSTTIALQ SPFPEYNGRF 120 EIGLGQSMVP SNYSCDDQCY GVLTTYGMRS MSGGRMLLPL NAPADAPIYV NPKQYEGILR 180 RRRARAKAER ENRLAKGRKP YLHESRHLHA MRRARGSGGR FVNTKKEGGA SANGASKTVS 240 AAPAARLATS PSTEPRRVPG LGKGSDGSNP RCQSRSSVSS LSGSEVSSIY DDHASRHQYG 300 GMEPHLRAPS FFTPLPAIMD GDHGGAAAIP SFKWAASDGC CELLKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 6e-17 | 165 | 223 | 2 | 61 | HAPB protein |
4g92_A | 6e-17 | 165 | 223 | 2 | 61 | HAPB protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6304 | 0.0 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG069000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796559.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796560.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796561.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A3L6TJ99 | 0.0 | A0A3L6TJ99_PANMI; Nuclear transcription factor Y subunit A-10-like | ||||
STRING | Pavir.Ib04124.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 6e-23 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG069000.1.p |