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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG067400.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 135aa MW: 15455.5 Da PI: 9.2264 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 29 | 3.3e-09 | 5 | 31 | 2 | 28 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPs 28 ++ +e+vCyv+CnfCntila + Pavir.9KG067400.6.p 5 QIAPPPEHVCYVHCNFCNTILAENFKV 31 567889***************987655 PP | |||||||
2 | YABBY | 125.7 | 6.5e-39 | 33 | 125 | 76 | 170 |
YABBY 76 kveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + ++ ++++n++++ +s++ ++ ++ + +++++ + +r ekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahf Pavir.9KG067400.6.p 33 NIHNISFTENYSEYAPSSSKFRMPMMfsAKGDQDHMLH----VRALEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHF 118 56778899999999999999999998744455556665....899********************************************* PP YABBY 164 Pkihfgl 170 P+ihfgl Pavir.9KG067400.6.p 119 PNIHFGL 125 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.1E-6 | 9 | 34 | IPR006780 | YABBY protein |
Pfam | PF04690 | 6.2E-37 | 45 | 125 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.91E-7 | 71 | 119 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-4 | 75 | 119 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSSAQIAPPP EHVCYVHCNF CNTILAENFK VHNIHNISFT ENYSEYAPSS SKFRMPMMFS 60 AKGDQDHMLH VRALEKRQRV PSAYNRFIKE EIRRIKASNP AISHREAFST AAKNWAHFPN 120 IHFGLGTHEK QQEA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5951 | 1e-142 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG067400.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795820.1 | 3e-69 | protein YABBY 2-like isoform X4 | ||||
Swissprot | Q10FZ7 | 1e-60 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A368SGV0 | 9e-74 | A0A368SGV0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib04136.1.p | 1e-88 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-37 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG067400.6.p |