PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG031100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 620aa    MW: 65221 Da    PI: 4.8374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.41.6e-1422376151374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsev 87 
                          lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+ l   f+e 
  Pavir.9KG031100.1.p 237 LVHALLACAEAVQQENFTAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAPDS--SLLDAAFADLLhahFYES 316
                          689****************************************************........4444443..34444444433445**** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+
  Pavir.9KG031100.1.p 317 CPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQ 406
                          ****************************************************************************************** PP

                 GRAS 178 fnvlvakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                          ++ lva +l+dle+ +L+ +        E++aVn+v++lhrll+++++le+    vL +v+ ++P++v+vveqea+hns+sFl+rf+e+l
  Pavir.9KG031100.1.p 407 YRGLVAATLADLEPFMLQPDGedtddePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESL 492
                          *****************65544556689***********************....*********************************** PP

                 GRAS 262 eyysalfdsleak........lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                          +yys++fdsle          +p+++  +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+
  Pavir.9KG031100.1.p 493 HYYSTMFDSLEGAgagqsadaAPAAAgGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLA 582
                          **********7776777777655555899************************************************************* PP

                 GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Pavir.9KG031100.1.p 583 LFAgGDGYRVEEKDGCLTLGWHTRPLIATSAWR 615
                          ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.0E-3136118No hitNo description
PfamPF120411.3E-3536112IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098568.47211594IPR005202Transcription factor GRAS
PfamPF035145.5E-140237615IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKREYQDAGG SGGDMGSSKD NMMAAAAAGE QNEEVDELLA ALGYKVRSSD MADVAQKLEQ  60
LEMAMGMGGV GGAGAAADDG FVSHLATDTV HYNPSDLSSW VENMLSELNA PPPPLPPAPR  120
LASTSSTVTG GATAGGGYFD LPPAVDSSSS TYALKPIPSP VAASADPSTD STREPKRMRT  180
GGGSTSSSSS SSSSLDGGRT RSSAVEAAPP ATQASAAANA PAVPVVVVDT QEAGIRLVHA  240
LLACAEAVQQ ENFTAAEALV KQIPMLASSQ GGAMRKVAAY FGEALARRVY RFRPAPDSSL  300
LDAAFADLLH AHFYESCPYL KFAHFTANQA ILEAFAGCRR VHVVDFGIKQ GMQWPALLQA  360
LALRPGGPPS FRLTGVGPPQ PDETDALQQV GWKLAQFAHT IRVDFQYRGL VAATLADLEP  420
FMLQPDGEDT DDEPEVIAVN SVFELHRLLA QPGALEKVLG TVRAVRPRIV TVVEQEANHN  480
SGSFLDRFTE SLHYYSTMFD SLEGAGAGQS ADAAPAAAGG TDQVMSEVYL GRQICNVVAC  540
EGAERTERHE TLGQWRNRLG RAGFEPVHLG SNAYKQASTL LALFAGGDGY RVEEKDGCLT  600
LGWHTRPLIA TSAWRLAAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6124461425377Protein SCARECROW
5b3h_D1e-6124461425377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.20220.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG031100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0620910.0DQ062091.1 Saccharum officinarum gibberellic acid-insensitive (GAI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A1E5VC250.0A0A1E5VC25_9POAL; DELLA protein DWARF8
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]