PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG001400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22420.4 Da PI: 4.6006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 41 | 88 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++++ WvAeIr+p+ + kr +lg+f t+ +Aa a+++a+++++g Pavir.9KG001400.1.p 41 YRGVRQRSW--EWVAEIREPN----SsKRRWLGTFSTPVDAALAYDRAAEAFHG 88 9******98..********83....25***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.15E-24 | 40 | 98 | No hit | No description |
PROSITE profile | PS51032 | 18.136 | 40 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-28 | 40 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-17 | 40 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-25 | 40 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-8 | 41 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-5 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
ATGTQQARAN GSANAKPSSG SRRSWSGQRG PGGPDNMRHN YRGVRQRSWE WVAEIREPNS 60 SKRRWLGTFS TPVDAALAYD RAAEAFHGDL AHLNFPADHA AAVTVATAAP AQWQPPSCSP 120 APATTADVFE ENEVNPLVDV AQGAGGGEVA NQPQQQQGAS WLSPEAVRDD DPDDISMYID 180 FDAVDHMMIA SLTGWFDGDG VHSPLWALGG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-13 | 40 | 96 | 5 | 63 | ATERF1 |
3gcc_A | 4e-13 | 40 | 96 | 5 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG001400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809123.1 | 5e-89 | dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A3L6T5W9 | 1e-102 | A0A3L6T5W9_PANMI; Dehydration-responsive element-binding protein 2D-like | ||||
STRING | Pavir.Ca01923.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14102 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 6e-13 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG001400.1.p |