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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG310700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22727.8 Da PI: 10.4481 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.2 | 2.3e-14 | 37 | 86 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g ++AeIrd s++g +r++lg+f+t e Aa a+++a+ + +g Pavir.8NG310700.1.p 37 FIGVRPRP-WGTFAAEIRD-STRG-GARVWLGTFDTLEAAALAYDQAAFSARG 86 57***999.**********.3433.4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.257 | 36 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-26 | 36 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 37 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-7 | 37 | 48 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-10 | 37 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-19 | 37 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.8E-7 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAVEGMVWSP NTVLERQLRQ PEDDASSPGE KKRPHAFIGV RPRPWGTFAA EIRDSTRGGA 60 RVWLGTFDTL EAAALAYDQA AFSARGAAAV LNFPVERVRE SLGTLALAGG AGGSPVLALK 120 RQHSKRRHKR RRKLSRPVTT TTSKDNLISK QQRQPPRHCS DVPRLPGVAM AAVPQHHVTV 180 HCSVLELEDL GADYLDELLR ASSELTAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-23 | 37 | 96 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG310700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727683 | 5e-78 | KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826606.1 | 2e-95 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2T7CR87 | 7e-96 | A0A2T7CR87_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00307.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 2e-21 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG310700.1.p |