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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.8NG309900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 505aa MW: 57663.6 Da PI: 8.7577 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.8NG309900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 46.9 | 4.6e-15 | 182 | 281 | 2 | 117 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
++lL++cA+av+++++ a++lL+++++ as +gd++qR+a++ L + l+ +++ + e l+a+kl++ ++ +
Pavir.8NG309900.1.p 182 RTLLISCAHAVATNNHIGASKLLKQIKQYASATGDATQRVAHCSQ--LWQLLMA----------ERPS----TLEFLKAYKLYYVACCFK 255
789**************************************9853..5555544..........3333....5899************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDf 117
k++ +Il+a+ g++++Hi+D+
Pavir.8NG309900.1.p 256 KVALSYSTMTILQAMVGKRKLHIVDY 281
*************************8 PP
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2 | GRAS | 124 | 1.8e-38 | 283 | 497 | 137 | 373 |
GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
+g p+++iT++g+p+ + +e++ee+g rL+k A+e+g+ +f+f++ ++k++ed+++e+L+++ +E+l+ ++
Pavir.8NG309900.1.p 283 GGLPEVKITAIGPPKLKscLAERIEELGCRLKKWANEFGLdSFKFHT-IMKKWEDVHIEDLNTDIDEVLVT-----------------KP 354
6789*********99998899*******************56*****.7******************9863.................35 PP
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
rd vL+ +k+++P+v++ + ++++ ++sFl+rf e ++yy+alfd l+a++pres+ r+++E+++lgr + n++a eg + ++r e+++
Pavir.8NG309900.1.p 355 RDIVLSNIKKMRPDVFIQSILNCSC-GSSFLTRFREVMSYYMALFDILDATMPRESKSRAVLEQFVLGRPALNIIAGEGLDLVQRPEKYR 443
7889*********************.679************************************************************* PP
GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+W+ r ++aG++++p+ k ++k + + + + + ++l++gW++ L++ S W
Pavir.8NG309900.1.p 444 QWQVRNQRAGLRQLPFVV------KDTVQKQHHKNFLIGQYGQWLLQGWMGLVLFAHSTW 497
**************9864......44566666677************************* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MMLPYISRVL LEDDLDDNKL NDHPALLQVQ QPFAQILSSS SYGANTANTD GAKHLLQDGR 60 DDESTLNHNS ALSMGTYIVQ VFLKGMEEAN MLLPRDNKFR GDKRYNRDHH MEEETRTSKA 120 AKTIMDQEEN CANEMLNEMM LHAYETCIRG MEELRVSMDN KVEKENRKKR NKAAKGNVVD 180 IRTLLISCAH AVATNNHIGA SKLLKQIKQY ASATGDATQR VAHCSQLWQL LMAERPSTLE 240 FLKAYKLYYV ACCFKKVALS YSTMTILQAM VGKRKLHIVD YKGGLPEVKI TAIGPPKLKS 300 CLAERIEELG CRLKKWANEF GLDSFKFHTI MKKWEDVHIE DLNTDIDEVL VTKPRDIVLS 360 NIKKMRPDVF IQSILNCSCG SSFLTRFREV MSYYMALFDI LDATMPRESK SRAVLEQFVL 420 GRPALNIIAG EGLDLVQRPE KYRQWQVRNQ RAGLRQLPFV VKDTVQKQHH KNFLIGQYGQ 480 WLLQGWMGLV LFAHSTWVAE YTSS*
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