PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG296800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 611aa    MW: 67888 Da    PI: 6.4334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG296800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.43.7e-912225972373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          + lL++cA+av++   + a++lL +++++asp+gd++qRla++++eAL+arla+++s+  + +++ +t+    +e l+a++lf  ++ + 
  Pavir.8NG296800.1.p 222 RALLVHCAQAVDD--RRGARELLRQVRQHASPTGDATQRLAHCLAEALEARLAGTGSGSRSLMATPTTN---RAEFLKAYRLFMATCCFE 306
                          789******9975..899************************************777777666666665...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          k++++ aN +I +a++g  r+H++D+++  G+QWp Ll+ La+R++gpp++ iT ++ p++g   + ++eetg+ L+++A+ +gvpf+f+
  Pavir.8NG296800.1.p 307 KVAFMFANLTICRAAAGRARLHVVDYGLHLGFQWPGLLRWLAARDGGPPEVTITFIDLPQPGfrPAGRIEETGRSLSNYARDIGVPFKFR 396
                          *************************************************************999************************** PP

                 GRAS 180 vlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          +++a r++++  eeL +       g +++Vn+ ++l++l d+sv ++   +rd+vL  +++++P v+++      h ++sF +rfleal 
  Pavir.8NG296800.1.p 397 AIAAARWDAIGGEELGLGVavddpGAVVVVNSLFKLETLADDSVVVDCpsPRDRVLGGIRGMRPAVFTHGVVHGFH-GSSFPTRFLEALF 485
                          **999**********65444445799****************98665444*******************9999988.779********** PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                          yysa+fd l+a++pr se r+++Er +lg+ + nv+aceg++r+ r  ++++W+ r ++aG++++pl+ +++ +++  +rk+   + + +
  Pavir.8NG296800.1.p 486 YYSAVFDVLDATMPRGSELRRVLERDVLGPCALNVIACEGRDRTDRFDSYKQWQLRSRRAGLRQLPLDREVVGEVRDEVRKHRyHRDFVI 575
                          **********************************************************************************99999*** PP

                 GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                           e++g+l++gWk+r L++   W
  Pavir.8NG296800.1.p 576 SEDHGWLLQGWKGRVLYAHANW 597
                          ******************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.132195577IPR005202Transcription factor GRAS
PfamPF035141.3E-88222597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDLVEPPPQS PSIFLDLPPT PHDGSGGGVP TSEQQQEEDV AGLKHIARML MEEEDMDGRF  60
SWHEDHPALL HAQQSLAQII SSSSSSDAME AAGAEHRVRI SSTDLLNMAF LRGREEASKL  120
LPRDDRLVIS PEPHIPCATN GLRRVRRLPE TEDVETGSGR ASKLMAMAAP ADEMIARMMA  180
SDCELSEEEM EDLRAAMADE AATRDVWRRR RQRKQQQAVD MRALLVHCAQ AVDDRRGARE  240
LLRQVRQHAS PTGDATQRLA HCLAEALEAR LAGTGSGSRS LMATPTTNRA EFLKAYRLFM  300
ATCCFEKVAF MFANLTICRA AAGRARLHVV DYGLHLGFQW PGLLRWLAAR DGGPPEVTIT  360
FIDLPQPGFR PAGRIEETGR SLSNYARDIG VPFKFRAIAA ARWDAIGGEE LGLGVAVDDP  420
GAVVVVNSLF KLETLADDSV VVDCPSPRDR VLGGIRGMRP AVFTHGVVHG FHGSSFPTRF  480
LEALFYYSAV FDVLDATMPR GSELRRVLER DVLGPCALNV IACEGRDRTD RFDSYKQWQL  540
RSRRAGLRQL PLDREVVGEV RDEVRKHRYH RDFVISEDHG WLLQGWKGRV LYAHANWVAD  600
DDDHTLTSRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-342105988379Protein SCARECROW
5b3h_A1e-342105987378Protein SCARECROW
5b3h_D1e-342105987378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207214RRRRQRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG296800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827775.10.0scarecrow-like protein 34
TrEMBLA0A2T8IAD20.0A0A2T8IAD2_9POAL; Uncharacterized protein
STRINGPavir.J23608.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-111SCARECROW-like 14