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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.8NG296700.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 434aa MW: 49177.9 Da PI: 8.0608 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8NG296700.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 299.5 | 8.3e-92 | 56 | 425 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
lL++cA+av++g+ aq+lL++++++as++gd +qRla++f ++L+arla+++s+l ++l+++ ++e l+a+kl+ ++ + +
Pavir.8NG296700.1.p 56 ALLIRCAQAVAAGSVMTAQELLKQIKQNASSTGDDTQRLAQCFSKGLEARLAGTGSQLWQSLTAEGPL---VIEYLKAYKLYMAACCFNR 142
69***************************************************999999999888887...******************* PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
++ + +I a++g++++Hi+D++ +G+QW+ Ll+ +a+R++gpp+++iT++++ ++ +e +e tg+rL+k A+e+gvpf+f+
Pavir.8NG296700.1.p 143 VALFFNIMTIEHAMAGKSKLHIVDYGPHHGFQWAGLLRWMANREGGPPEVKITAISRLQPRscPSEGIEDTGHRLSKCAREFGVPFKFHS 232
*********************************************************9999999************************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
++ r+e++ ++L+++p+E+l+V ++ l+des ++ +rd+vL+ +++++P+v++ ++++ ++sFl+rf eal +ysalf
Pavir.8NG296700.1.p 233 -ITARWETICNDNLKTDPDEVLIVIDLFNFSILMDESIYFDNpsPRDTVLNNIRKMRPDVFIQGVVNSSY-GTSFLARFREALFHYSALF 320
.699*********************************98877779**********************999.679**************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
d+++a++pre + r+++E+ +lg + nv+aceg + ++r e++++W+ r ++aG++++pl+ +++k k + k + + + v e+ ++l
Pavir.8NG296700.1.p 321 DMFDATIPRECKLRSVLEQGMLGHTVLNVIACEGVDLVNRPERYRQWQVRNQRAGLRQLPLKPNIVKVLKEKVMKDHHKDFFVGEDGQWL 410
**********************************************************************9999999788********** PP
GRAS 359 vlgWkdrpLvsvSaW 373
++gWk+r L++ S W
Pavir.8NG296700.1.p 411 LQGWKGRILYAHSTW 425
*************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MMMMEELGEM FDKMMLRGYE TCIKDMEKLR SAKADEAMNN KKGGSKMRTD VVDLCALLIR 60
CAQAVAAGSV MTAQELLKQI KQNASSTGDD TQRLAQCFSK GLEARLAGTG SQLWQSLTAE 120
GPLVIEYLKA YKLYMAACCF NRVALFFNIM TIEHAMAGKS KLHIVDYGPH HGFQWAGLLR 180
WMANREGGPP EVKITAISRL QPRSCPSEGI EDTGHRLSKC AREFGVPFKF HSITARWETI 240
CNDNLKTDPD EVLIVIDLFN FSILMDESIY FDNPSPRDTV LNNIRKMRPD VFIQGVVNSS 300
YGTSFLARFR EALFHYSALF DMFDATIPRE CKLRSVLEQG MLGHTVLNVI ACEGVDLVNR 360
PERYRQWQVR NQRAGLRQLP LKPNIVKVLK EKVMKDHHKD FFVGEDGQWL LQGWKGRILY 420
AHSTWVAEDA ISE*
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