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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG296000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 666aa MW: 73259.8 Da PI: 5.1072 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.2 | 3.9e-101 | 285 | 656 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cA+av++++ + a++lL ++++++sp+gd++qRla +f+e+L+arla+s+s++yk+l +++ s ++e l+a++++ +s + Pavir.8NG296000.1.p 285 STLLIHCAQAVATDNRRSATELLRQIKQHSSPRGDATQRLANCFAEGLEARLAGSGSQVYKSLMAERIS---VVEYLKAYQVYLAASCFK 371 579************************************************************999998...****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 +++ N +I + ++g ++vHi+D++i++G+QWp+Ll +a+ ++gpp++RiTg++ p++g + ++eetg rL++ A++lgvpf+f+ Pavir.8NG296000.1.p 372 MMAFKFSNMTIAKVIAGRKKVHIVDYGIQYGFQWPSLLGYMATLKGGPPQVRITGIDLPQPGfrPASRIEETGCRLSNCASQLGVPFKFH 461 *************************************************************9*9************************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ r+e++ +++L+++p+E+l+Vn++ + +l+de v+++s +rd vL +++++P+ +++ +a+++++ F++rf eal ++sa+ Pavir.8NG296000.1.p 462 S-ITARWETIGVDDLNIDPDEVLIVNSIRNFGNLMDEGVDIDSpsPRDVVLGNIRKMKPDAFILFVMNASYSAPFFVTRFREALFFHSAI 550 *.699**********************************9999889******************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 fd+l+a++pr++++r vEr l+++ + nvvaceg +r+er et+++W+ r ++aG++++pl+ +++k ++ +r+ + + + ++ ++++ Pavir.8NG296000.1.p 551 FDMLDATAPRDNHQRFLVERGLFRKCALNVVACEGLDRVERPETYKQWQVRNHRAGLRQLPLDPDVVKAVRENVRNLYHKDFVIDVDHQW 640 ******************************************************************************888********* PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+ gWk+r L+++S W Pavir.8NG296000.1.p 641 LLEGWKGRILYAMSTW 656 **************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.006 | 258 | 637 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-98 | 285 | 656 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MEEDMDDNFL YQFPDHPALL QAQEPYARIL SDTNSTASGS AATLSPSSDY DPVQLLVSPL 60 SPDMGLHDTG DDAGTFFLPA QDGVSPGLEQ NPAKSGTAGD ADAFVAGRFG SGTGTGVQSS 120 AFLDIADEQS PAQLGTTTLP LPAGDGDHAV LASAFFSGQN GENMDMLSTA FLKGMEEANK 180 FLPTINNSLL IDQEEGRVNG RGRKNRLNSD DLEAETCRKS KLMVPEPEET GDKVDEMIVN 240 GREMCLKEME ALRITMGSDA KNNSRKGKGR SAKGRRSADE AVDLSTLLIH CAQAVATDNR 300 RSATELLRQI KQHSSPRGDA TQRLANCFAE GLEARLAGSG SQVYKSLMAE RISVVEYLKA 360 YQVYLAASCF KMMAFKFSNM TIAKVIAGRK KVHIVDYGIQ YGFQWPSLLG YMATLKGGPP 420 QVRITGIDLP QPGFRPASRI EETGCRLSNC ASQLGVPFKF HSITARWETI GVDDLNIDPD 480 EVLIVNSIRN FGNLMDEGVD IDSPSPRDVV LGNIRKMKPD AFILFVMNAS YSAPFFVTRF 540 REALFFHSAI FDMLDATAPR DNHQRFLVER GLFRKCALNV VACEGLDRVE RPETYKQWQV 600 RNHRAGLRQL PLDPDVVKAV RENVRNLYHK DFVIDVDHQW LLEGWKGRIL YAMSTWDADD 660 AVSEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-39 | 267 | 656 | 1 | 377 | Protein SCARECROW |
5b3h_D | 1e-39 | 267 | 656 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG296000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826966.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A3L6PL53 | 0.0 | A0A3L6PL53_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ha00318.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-153 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG296000.1.p |