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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG295900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 809aa MW: 87921.7 Da PI: 4.5822 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 344.3 | 2e-105 | 428 | 800 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++ L++cA+ v++gd + a +lL ++++++sp+gd++qR+a++f+e+L+arla+++s++y++l +++ts ++e l+a+klf +s + Pavir.8NG295900.1.p 428 LRTMLIHCAQSVATGDRRSAMELLRQIKQHSSPRGDATQRMAHCFAEGLEARLAGTGSQVYQSLMAKHTS---VVEFLKAYKLFTAASSL 514 5789***************************************************************999...***************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+ + aNq+Il av+g +++Hi+ +++++GlQWp Ll+ L++R++gpp++R Tg++ p++g + ++eetg+rL++ A e+gvpf+f Pavir.8NG295900.1.p 515 KKVHIIFANQTILSAVAGRSKLHIVVYGLQYGLQWPGLLHFLSCREGGPPEVRFTGIDLPQPGfrPAYQIEETGRRLSNCALEFGVPFKF 604 **************************************************************99999*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ +a ++e++ e+L+++p+E+l+V + +l+desv+++ +rd vL+ +++++P+v+++ + ++++ Fl+rf eal +ysa Pavir.8NG295900.1.p 605 QA-IAAKWETVCAEDLNIDPDEVLVVYSECDFSKLMDESVDVDTpsPRDMVLNNIRKMRPNVFILFVMNGTYGAPFFLTRFREALFFYSA 693 **.799********************************998776669******************************************* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 lfd+l+a++pr+++er +Er ++gr++ nv+acega+r er et+++W+ r ++aG+k++pl+ +++k a+ +++++ + + ++e++ Pavir.8NG295900.1.p 694 LFDMLDATIPRDNDERLLIERDIFGRSALNVIACEGADRAERPETYKQWQVRNHRAGLKQLPLNPEVVKIARDKVKNYYHKDFLIDEDHR 783 *******************************************************************************889******** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l++gWk+r L+++S W Pavir.8NG295900.1.p 784 WLLQGWKGRVLYAMSTW 800 ***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.719 | 402 | 781 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-103 | 428 | 800 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MSATPEESLG QGACLAAPEP FSPSVFLDLP PTPRPDGDAD DPASDDDLVL PFISRMLMEE 60 DIDDKFFYQF PDHPALLNAQ QPYAQILLSD DSATTSNSSS AGTAAANSTL SPSSSSDAPA 120 SAEPAWPYDP IELSQLLRSP PYPDTVLGLH DFTADDVDAL LLQGQGEATA GFPPFLDTAG 180 GGAGGGQRQG AASIATQIAA GAGSPSLAAQ NAGTQSSAAD EQDTKTATAS VIPNSVADEQ 240 DAKATNATTL PAADSDPAAL ASAFFSAQSG ESMDMLNMAF LKGMEEAKKF LPTNNSLLID 300 LEDAPGRSLP GDSKPATGFA AAQVKEEVVA DGMLLFGGST TGRGRKNRHT DEDLEAESGR 360 NSKLMMPEQE ETGAGELFDE LMSCNYDGFL KRMNDLRIAM DSESEKSARR VSGKGARGRQ 420 RADEVVGLRT MLIHCAQSVA TGDRRSAMEL LRQIKQHSSP RGDATQRMAH CFAEGLEARL 480 AGTGSQVYQS LMAKHTSVVE FLKAYKLFTA ASSLKKVHII FANQTILSAV AGRSKLHIVV 540 YGLQYGLQWP GLLHFLSCRE GGPPEVRFTG IDLPQPGFRP AYQIEETGRR LSNCALEFGV 600 PFKFQAIAAK WETVCAEDLN IDPDEVLVVY SECDFSKLMD ESVDVDTPSP RDMVLNNIRK 660 MRPNVFILFV MNGTYGAPFF LTRFREALFF YSALFDMLDA TIPRDNDERL LIERDIFGRS 720 ALNVIACEGA DRAERPETYK QWQVRNHRAG LKQLPLNPEV VKIARDKVKN YYHKDFLIDE 780 DHRWLLQGWK GRVLYAMSTW VAEDNNIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-45 | 434 | 800 | 25 | 378 | Protein SCARECROW |
5b3h_A | 7e-45 | 434 | 800 | 24 | 377 | Protein SCARECROW |
5b3h_D | 7e-45 | 434 | 800 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10659 | 0.0 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG295900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976095 | 0.0 | EU976095.1 Zea mays clone 622740 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826965.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A2T7CRC2 | 0.0 | A0A2T7CRC2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00317.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-151 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG295900.1.p |