PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG275300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 594aa MW: 66484.1 Da PI: 4.7805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG275300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	274	297	2	23
EETTTT.EEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCg.ksFsrksnLkrHirt.H 23 Cp+C+ k+F ++ +L +H+ H Pavir.8NG275300.1.p 274 ICPICDrKRFVDSGLLLSHMCGkH 297 7*******************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	3.2E-5	2	37	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	3.2E-5	124	181	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	3.4E-12	220	316	IPR006865	Domain of unknown function DUF629

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MYAEAEAEFR RALSIPNPSD PALHNAAYGM YEGYEHERDP AFVAERVEEA RERARGSYAR 60 MTVEELVPSA VQRVLEAGKL LGAAEGRKRG KLVAETFPNL ARAQYLHAYM DLEFVRSLDP 120 AIDKRPFLRR TLTVADRLAR AFPRSPVIAC FRAKLLFILG EYDAAERECR RALDMKEPDD 180 PQLDCIPVGS ISGENLGARL VSLACEFHEL INKILMVAAD YWDSMSGERR HDSFLRVRSD 240 VLQDEYSKVD PLCAFTMSDV RSFVREHKSW KFWICPICDR KRFVDSGLLL SHMCGKHPRA 300 VLPRLQSLLD QALSSEASEE GGFLDGVTFC EDSAEQDMIC LNKSSVVFKW LFYAPSSGVG 360 AKPLPEVRAK KREKGCMILE GIKEKMRTLP TDKSSTEFAE ALPRIQELWH NFLKASMLDY 420 RGVILELARS FLWRELKKCM TEDPQLAAKR ISATDIDAIF TTEAEPSHAE GDHETGGNEQ 480 PSQADGALIV SEDHKESKVP IEHGESSETP ANNTELTDLV TSVAESGNDL YATLDKLDID 540 PKINENNQES EFQVEGESSE ATVTNMADPA TSMAESGNDL DVKLENLQIN RNF*

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MYAEAEAEFR RALSIPNPSD PALHNAAYGM YEGYEHERDP AFVAERVEEA RERARGSYAR  60
MTVEELVPSA VQRVLEAGKL LGAAEGRKRG KLVAETFPNL ARAQYLHAYM DLEFVRSLDP  120
AIDKRPFLRR TLTVADRLAR AFPRSPVIAC FRAKLLFILG EYDAAERECR RALDMKEPDD  180
PQLDCIPVGS ISGENLGARL VSLACEFHEL INKILMVAAD YWDSMSGERR HDSFLRVRSD  240
VLQDEYSKVD PLCAFTMSDV RSFVREHKSW KFWICPICDR KRFVDSGLLL SHMCGKHPRA  300
VLPRLQSLLD QALSSEASEE GGFLDGVTFC EDSAEQDMIC LNKSSVVFKW LFYAPSSGVG  360
AKPLPEVRAK KREKGCMILE GIKEKMRTLP TDKSSTEFAE ALPRIQELWH NFLKASMLDY  420
RGVILELARS FLWRELKKCM TEDPQLAAKR ISATDIDAIF TTEAEPSHAE GDHETGGNEQ  480
PSQADGALIV SEDHKESKVP IEHGESSETP ANNTELTDLV TSVAESGNDL YATLDKLDID  540
PKINENNQES EFQVEGESSE ATVTNMADPA TSMAESGNDL DVKLENLQIN RNF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	368	374	AKKREKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG275300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791203.1	0.0	uncharacterized protein LOC112872314
TrEMBL	A0A2T7CPX3	0.0	A0A2T7CPX3_9POAL; Uncharacterized protein
STRING	Pavir.J27150.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1389	4	4

Link Out ? help Back to Top
Phytozome	Pavir.8NG275300.1.p