PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG257400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 306aa MW: 34197.9 Da PI: 7.8138 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.7 | 9.7e-24 | 98 | 194 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn+YA+++GFs+r+++s++s++ +e tk+ +vC+k g +++ek + +++rr ++rt+C a++ v+k++ g+wev ++ Pavir.8NG257400.1.p 98 DYYNSYARHTGFSIRIDTSRESEKANEKTKYIYVCQKAGVNKKEKVAddgpitekkIVRQRRMDYVDRTHCPARMIVRKTSPGHWEVVNF 187 69*****************************************99999****9988888999999************************* PP FAR1 82 eleHnHe 88 e eHnHe Pavir.8NG257400.1.p 188 EREHNHE 194 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-22 | 98 | 194 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MCVAGGAGAH VSSSNLTLLV ISNEALHLPS NSAPPELATQ QLSNSASKVL PAESGGVTVP 60 TAETTVDGVD VEDGVEVLST PQEPFVGMSF NTSDATKDYY NSYARHTGFS IRIDTSRESE 120 KANEKTKYIY VCQKAGVNKK EKVADDGPIT EKKIVRQRRM DYVDRTHCPA RMIVRKTSPG 180 HWEVVNFERE HNHERLRKFS LTKYLKSHRD IPAEEKEFIK LLHGCCIMTT RAYQIMAELY 240 GGIENCPYIE GDAKNLCVEY RAEYRGKDVK ATLEYLLTVL KCHFHPSTIL NNKGKPHALL 300 TYLYH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG257400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF282092 | 4e-36 | JF282092.1 Panicum virgatum clone H06_PVCA5 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6TA85 | 1e-143 | A0A3L6TA85_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J18884.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Pavir.J26914.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-19 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG257400.1.p |