PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG257400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 306aa MW: 34197.9 Da PI: 7.8138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG257400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.7e-24	98	194	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn+YA+++GFs+r+++s++s++ +e tk+ +vC+k g +++ek + +++rr ++rt+C a++ v+k++ g+wev ++ Pavir.8NG257400.1.p 98 DYYNSYARHTGFSIRIDTSRESEKANEKTKYIYVCQKAGVNKKEKVAddgpitekkIVRQRRMDYVDRTHCPARMIVRKTSPGHWEVVNF 187 69***************************************999999988888999999********************* PP FAR1 82 eleHnHe 88 e eHnHe Pavir.8NG257400.1.p 188 EREHNHE 194 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-22	98	194	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MCVAGGAGAH VSSSNLTLLV ISNEALHLPS NSAPPELATQ QLSNSASKVL PAESGGVTVP 60 TAETTVDGVD VEDGVEVLST PQEPFVGMSF NTSDATKDYY NSYARHTGFS IRIDTSRESE 120 KANEKTKYIY VCQKAGVNKK EKVADDGPIT EKKIVRQRRM DYVDRTHCPA RMIVRKTSPG 180 HWEVVNFERE HNHERLRKFS LTKYLKSHRD IPAEEKEFIK LLHGCCIMTT RAYQIMAELY 240 GGIENCPYIE GDAKNLCVEY RAEYRGKDVK ATLEYLLTVL KCHFHPSTIL NNKGKPHALL 300 TYLYH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG257400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF282092	4e-36	JF282092.1 Panicum virgatum clone H06_PVCA5 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6TA85	1e-143	A0A3L6TA85_PANMI; Uncharacterized protein
STRING	Pavir.J18884.1.p	0.0	(Panicum virgatum)
STRING	Pavir.J26914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-19	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG257400.1.p