PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG253200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 197aa MW: 21250.6 Da PI: 7.1872 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 39.4 | 1.6e-12 | 2 | 28 | 52 | 78 |
TTT--SS--S-STTTT-------S--- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78 lsefDe+krsCr+rL++hn+rrrk+q+ Pavir.8NG253200.3.p 2 LSEFDEGKRSCRKRLDGHNRRRRKPQH 28 99**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.887 | 1 | 26 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-6 | 2 | 25 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.02E-10 | 2 | 30 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MLSEFDEGKR SCRKRLDGHN RRRRKPQHDL ANLGGFFPYH QVNQFEMYPR TIPTACQDSD 60 DMSLVDPQPP FSISFSRTPK QFPFPHDGGS LLSASRHGHF LVQDGNHTGS SACSHDLSGT 120 LGPECALSLL SSSLHHPSPA GHAQVASALS RIASTSQQVA ATPVTTAFAS GGSHHVFVPD 180 AALEDPSQAL PFPWQQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 25 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG253200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826748.1 | 1e-107 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 4e-52 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A3L6PNI8 | 1e-116 | A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19 | ||||
STRING | Pavir.Ha00508.1.p | 1e-139 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-11 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG253200.3.p |