PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG252900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 300aa MW: 34235.4 Da PI: 7.8249

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG252900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	103	125	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Pavir.8NG252900.1.p 103 SCSVCSRVYPTSRLLSIHVSEaH 125 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	6.5	75	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	77	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	102	125	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	104	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.4	140	165	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	142	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MQQRPEDAME EVEAEAAAGP ELGFWLAARR RLAPDDPFFA AGDLERELLA KHVALDLSED 60 DRNQLEKMEV ASTTLFCPIA GCGAHLDCLE DFEDHYVTRH TASCSVCSRV YPTSRLLSIH 120 VSEAHDSYFQ AKVARGFPMY ECLVEGCGVK LKSYKSRRQH LIDKHQFPKS FEFFKKARPS 180 QRQRQKSQRR QTAHKGEETR DNSMNVDGKG TRQTNWRYRP KQHDHKELKE NECQHKEAKE 240 NEMEVEQKID ELTSAVSKLS TAESTPADIT FGHRRSRGLT FVPRSIRQSK QAASQPEAK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5570	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG252900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826617.1	0.0	zinc finger protein 511
TrEMBL	A0A3L6PG64	0.0	A0A3L6PG64_PANMI; Uncharacterized protein
STRING	Pavir.Ha00588.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10911	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	9e-92	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	Pavir.8NG252900.1.p