PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG232800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 423aa    MW: 46602.4 Da    PI: 7.4206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG232800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05254276123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+Fs+ + L  H++ H
  Pavir.8NG232800.1.p 254 FVCTTCNKTFSSYHGLGGHMSIH 276
                          89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355280113131IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.74E-7114131No hitNo description
PfamPF139120.022114134IPR007087Zinc finger, C2H2
SuperFamilySSF576676.74E-7249276No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4252280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013254276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572254281IPR007087Zinc finger, C2H2
PfamPF139121.8E-7254277IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
SMARTSM0035548302324IPR015880Zinc finger, C2H2-like
PfamPF139120.0021307326IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MADTSEESRG EQFVCRVASS GLVLKFKLDK HGAFPSESTI PLQEVRSSDK ENATDPLDHS  60
EVKRAQNVIP LLEQYEIGKG GNKDAIPLLD NANKVAHTDE GNNRAEMVDN SANCSKSFKK  120
ISSLHGHMGS HRREDNKRMR RMQEQPIPVE ASQTDVASLP KTSKKKKPKF KHDCEVSASE  180
ALVEMSAAPV MSAAPVWYPK YSAATIDLST IVTSSDAHIE TAMMREAAEI LTTLEDRISK  240
EIRKVASPLS VRDFVCTTCN KTFSSYHGLG GHMSIHNKQK RSLLEDASGS SSGYGERCTR  300
KYVRRKCNKW FPTGQSFSGH KRKHYEEHKM TVLTDGNGKP PMPLPHENVL SSGTAVLPPD  360
EKSQLPAFDA VQQPQQANYR NETEPPPSGA PMISVDTTAD LSTSRRVLDL NMLPPETDDS  420
EP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG232800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S6E01e-105A0A368S6E0_SETIT; Uncharacterized protein
STRINGPavir.J12415.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2236947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-11salt tolerance zinc finger