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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG194300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 32524.9 Da PI: 8.9002 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.8e-32 | 131 | 186 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhAa++Gg+a+DGCgEfmps g+eg+ +alkC+ACgCHRnFHR+e+++ Pavir.8NG194300.1.p 131 AVRYRECLKNHAAAIGGNATDGCGEFMPS-GKEGSLEALKCSACGCHRNFHRKESDD 186 79**************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.8E-29 | 132 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-30 | 133 | 183 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-24 | 133 | 185 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.383 | 134 | 183 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 187 | 253 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.98E-19 | 190 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.1E-27 | 194 | 250 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MVSIVPLQRR TEASAAAAAA ARSIFSLERR RRDEEGSGGG MDLSGTQGEL AIPMHANVVS 60 PYGGGGGGGG GVGGGRAAGG HVLQLHHEHH GNNNGQSPVL PPSPPAAAAE VMESSAKKRG 120 PAAGAGIGSA AVRYRECLKN HAAAIGGNAT DGCGEFMPSG KEGSLEALKC SACGCHRNFH 180 RKESDDDDDD IYAKRFRTKF TPEQKARMLE FAERVGWRLQ KLDDVMVQAF CQEIGVKRRV 240 LKVWMHNNKQ NLATKRLEAS PQEPPAMASP PAPPLMPLQM MPAAMMPPAA GPSGCHRGGP 300 GSPPPPPKLE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-24 | 194 | 251 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG194300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966855 | 4e-98 | EU966855.1 Zea mays clone 297761 mRNA sequence. | |||
GenBank | KJ728045 | 4e-98 | KJ728045.1 Zea mays clone pUT6191 ZF-HD transcription factor (ZHD1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661088.1 | 2e-74 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q2QW44 | 5e-57 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A3L6F833 | 2e-75 | A0A3L6F833_MAIZE; Zinc-finger homeodomain protein 4 | ||||
STRING | Pavir.Ha01060.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 6e-53 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG194300.1.p |