PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG190200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 13409.1 Da PI: 6.5095 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.2e-06 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k Fs++ L H++ H Pavir.8NG190200.1.p 39 FSCSYCSKKFSTSQALGGHQNAH 61 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.6E-6 | 38 | 62 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.48E-6 | 38 | 66 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 39 | 64 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MDPTGGEGCG GGGGGDRHLD LNLSLRSSLE LELEPLGYFS CSYCSKKFST SQALGGHQNA 60 HRLERSIAKR SRELAAARGV EEDARRGKEP RISAPPIMAP SSSHMIMASP EAGEDLADKI 120 DLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG190200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828607.1 | 1e-49 | zinc finger protein GIS3-like | ||||
TrEMBL | A0A2T8I820 | 2e-48 | A0A2T8I820_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01090.1.p | 1e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-15 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG190200.1.p |