PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG182900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 357aa    MW: 39102.6 Da    PI: 9.824
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG182900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.89.8e-082292751763
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          A+rsR RK+++i+eLe +v++L++e  +   e+e l+++   l+ e+
  Pavir.8NG182900.1.p 229 AQRSRVRKLQYIAELEGRVQALQSEGVEVSAEMEFLTQQNIMLDLEN 275
                          89*************************99999999999887766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-6218277IPR004827Basic-leucine zipper domain
CDDcd147031.38E-14219269No hitNo description
SuperFamilySSF579592.14E-6228271No hitNo description
Gene3DG3DSA:1.20.5.1707.1E-7229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMANAKLQKQ ALLPPRSPFP TAAAGAPSPY ADRGPIARPQ GAAVHPRYGH GHHQRTSSES  60
FIEEQPPSWL DDLLNEPETP AARQHGRAGH RRSSSDSFAL FDGAAAGAGA CANGFEGMGG  120
RGGQPAPWAG VQEYYVKPGS FGRAHGQPWE QGMPNLSGFR HGGGLPMPTK DKVGGHHGLP  180
NMLRDNNHGM DKRTPDDASH DQKVGAKEGV PPKHAQSEVD NKRAKQQYAQ RSRVRKLQYI  240
AELEGRVQAL QSEGVEVSAE MEFLTQQNIM LDLENKALKQ RLESLAQEQL IKRFQQEMFE  300
REIGRLRSLY QQQQQQQAPA LVRSNSRDLD AQFANLSLKH KDPSSGRDAL SGPLRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.104990.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG182900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751020.0EU975102.1 Zea mays clone 469036 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828158.10.0uncharacterized protein At4g06598-like
RefseqXP_025828159.10.0uncharacterized protein At4g06598-like
TrEMBLA0A3L6Q4E60.0A0A3L6Q4E6_PANMI; Uncharacterized protein
STRINGPavir.Ha01130.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33103666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.23e-48bZIP family protein