PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 345aa MW: 37110.3 Da PI: 8.1654

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG136500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70.5	2e-22	130	174	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++k+CErH++r+++rsrk++e+ Pavir.8NG136500.1.p 130 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRNCHRSRKHVES 174 79****************************************996 PP
2	QLQ	57.3	4.7e-20	70	106	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Pavir.8NG136500.1.p 70 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIRR 106 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.4E-12	70	106	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.4E-14	71	105	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.464	71	106	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.468	130	174	IPR014977	WRC domain
Pfam	PF08879	2.0E-17	131	173	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
METGRDGFFG AAERASPPPP PPSCSFLGSA AATTGSGGAQ MLSFSSSGAA GLGLSSGASK 60 MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIRRSVNP WSGLGSSSLG 120 WTPFRPGSGD AEPGRCRRTD GKKWRCSRDA VGDQKYCERH IKRNCHRSRK HVESRKVTPT 180 IAEPSLAVSG GPSLHSYAVP WQQQVKSSAA NVTDPFPRVS NRKLLEKQNV HSQLSVSTPM 240 DSSDFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSRETLD 300 DGPLGEVFKS KSCQSAYADI LTDQWTATHD LHSPTGILQL SNSNT

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

METGRDGFFG AAERASPPPP PPSCSFLGSA AATTGSGGAQ MLSFSSSGAA GLGLSSGASK  60
MQGVLSRVRG PFTPTQWMEL EHQALIYKHF AVNAPVPSSL LLPIRRSVNP WSGLGSSSLG  120
WTPFRPGSGD AEPGRCRRTD GKKWRCSRDA VGDQKYCERH IKRNCHRSRK HVESRKVTPT  180
IAEPSLAVSG GPSLHSYAVP WQQQVKSSAA NVTDPFPRVS NRKLLEKQNV HSQLSVSTPM  240
DSSDFSTSGS SQNRDIVALS PVEFQHDHDQ AYLVHGVGSS AENDNELQES LLLVSRETLD  300
DGPLGEVFKS KSCQSAYADI LTDQWTATHD LHSPTGILQL SNSNT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7930	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG136500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827128.1	0.0	growth-regulating factor 8-like isoform X1
Swissprot	Q6AWY1	1e-138	GRF8_ORYSJ; Growth-regulating factor 8
TrEMBL	A0A2S3IEP9	0.0	A0A2S3IEP9_9POAL; Uncharacterized protein
STRING	Pavir.Hb00712.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12960	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-41	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pavir.8NG136500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]