PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG113600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 669aa    MW: 75240.6 Da    PI: 8.4622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG113600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23.1e-274876041128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lpp frFhPtdeel+ +yL++++         +i+evdiy+++PwdLp+++k ++ ewy  +  +k+ +   +++  ++sgyW atgk +
  Pavir.8NG113600.1.p 487 LPPAFRFHPTDEELILHYLCNRA---------TIPEVDIYNMQPWDLPARAKFGDCEWYLSCFPKKEWHIFCHRKYPISSGYWMATGKAR 567
                          79*****************9864.........4899************99999999***999988887765555556899********** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ +   g+  g k+ Lvf+    p+g+ t Wvmhey+l
  Pavir.8NG113600.1.p 568 RLTLSgaAGKMLGSKRRLVFH---LPSGKMTGWVMHEYHL 604
                          **998778889*********9...89************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.8E-72103IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF078872.0E-37337484IPR012416CALMODULIN-BINDING PROTEIN60
SuperFamilySSF1019416.41E-39484638IPR003441NAC domain
PROSITE profilePS5100530.831487638IPR003441NAC domain
PfamPF023657.1E-19488604IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MLVVVNGGFN QHGNQYTWSR KDFERNIKRP RQGNSVMEDE HHPVESTVSN CVFKLDGGVK  60
GHSDATILYN SSNKKVRLGV MVLSPTDERV LEGLSNLFFV RGHDRPARQC NPHNSGLKRL  120
KHKARVGYGY QERNGSMLIV QNPSVTNLVQ PEESRCNPAA GTPLFPGNTF TEASASIPQH  180
QFSHLGTTNI GIASATYNLP AGNEQLLLSG GNFAHPDLVS HDYSTGSENF PNATKGTHFN  240
MDQIALPVQL LWDVPNVEST KRWSLLDQLM PLYSCAQKYT NYDSPTMGIM PKLYVSLAII  300
PKQVTQSRRK RGVLIELLEL EDSDEKRPRK RKSHTKYRLR FVNKVNEAYY TMNPIKADDG  360
SHLKVALFDE NDMKITFGPL SSASVEVVAL HGDFNVNGQD YWTSEEFSHC VVCPWHRKEA  420
SVLGGDRILV LAEGEACLGN AFFQVTSFLA RTGKFKMGVM LASVQEERIQ EGISEPLLVK  480
DRQLEGLPPA FRFHPTDEEL ILHYLCNRAT IPEVDIYNMQ PWDLPARAKF GDCEWYLSCF  540
PKKEWHIFCH RKYPISSGYW MATGKARRLT LSGAAGKMLG SKRRLVFHLP SGKMTGWVMH  600
EYHLPDNTTL RSIISSTTAS SSTSSTRDEW VLCRIFKKTD LLQPSPFLDD DAPVSPLRDC  660
RLQAFLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2948764015170Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331KRPRKRK
2329333KRKSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440970.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG113600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694641.10.0PREDICTED: uncharacterized protein LOC107304550
TrEMBLA0A368SAV41e-126A0A368SAV4_SETIT; Uncharacterized protein
STRINGPavir.Ha00781.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1537446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-32NAC domain containing protein 47