PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG074600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 353aa    MW: 37969.7 Da    PI: 5.113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG074600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.3e-5091331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +ppGfrFhPtdeelv++yL +k+ g +l +  vi+evd+yk++Pw+Lp++++++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk
  Pavir.8NG074600.1.p   9 MPPGFRFHPTDEELVMYYLLRKCGGLPLAA-PVIAEVDLYKFDPWSLPERAAGGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADK 97 
                          79*************************999.89***************999999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v +   + v +kk Lvfy g+ p+g+kt+W+mheyrl
  Pavir.8NG074600.1.p  98 PVGA--PRPVAIKKALVFYAGKPPRGVKTNWIMHEYRL 133
                          **99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-605164IPR003441NAC domain
PROSITE profilePS5100558.7569164IPR003441NAC domain
PfamPF023655.2E-2610133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDSGGALQMP PGFRFHPTDE ELVMYYLLRK CGGLPLAAPV IAEVDLYKFD PWSLPERAAG  60
GEKEWYFFSP RDRKYPNGSR PNRAAGAGYW KATGADKPVG APRPVAIKKA LVFYAGKPPR  120
GVKTNWIMHE YRLADVDRSA AARKKTNNNA LRLDDWVLCR IYNKKGVIER YDTVDDDEVA  180
DAAAGDVKPA AAAKNPRGRA PMKVEMADYG GYYDDGYDLE TPSAGMLCFD RPPAVAPVPA  240
APAPAPALSP AKPDPDRDST SMPWMHTDNS SSGSEHVLSP SLDLPDRDHA ESQPGGGCAG  300
WWPGTDWAGG DDGFVVLDDG GAALFGPPSP GLFARVDAAA LGDMLAYLQR PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-7421708174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.36521e-165callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and embryo. Weakly expressed in callus. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG074600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572071e-161AK357207.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827492.10.0NAC domain-containing protein 71-like
SwissprotQ53NF71e-149NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A3L6Q3570.0A0A3L6Q357_PANMI; NAC domain-containing protein 71-like
STRINGPavir.Ha00897.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-94NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]