 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.8NG062800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 397aa MW: 40654.7 Da PI: 9.5646 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8NG062800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 138.5 | 5.6e-43 | 103 | 245 | 2 | 122 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88
a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s as++ss+
Pavir.8NG062800.1.p 103 APAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGASHPSSAas 192
899******************************************************************999999999999999999876 PP
TCP 89 kaaksaakskksqksaasalnlakesr...................akarara 122
+aa++ ++ +++++ a++l ++ ++ a + +r+
Pavir.8NG062800.1.p 193 RAAAAFHHLPPPHHEVAAMLGWNHGHHhqqqflpppqqqqapqdpgAGEFMRK 245
44444447777788888888888844434555555555444444444444444 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MDAPSSSTST STSTNSSRSA SEHQQHQHRQ HHAAGQPHHP FYYAGAAGGG AAAAANAAGM 60
PQFMGSLAIV QQAPSAGAGA GEVQLAQASG SSGGAEKKAV VPAPAKRPTK DRHTKVEGRG 120
RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI VAATGTGTIP ANFSSLAVSL 180
RSGASHPSSA ASRAAAAFHH LPPPHHEVAA MLGWNHGHHH QQQFLPPPQQ QQAPQDPGAG 240
EFMRKRYREG ADDLFKDAAA RQNPDDGGSG EGEEHKARVA PPAGAMWAVA PPSSSAAGAF 300
WIQPAWAFGA GAGASTVQAP LQFMSTRSSS NNNFPGGATM DANIGMLAAL NASGGGAQHH 360
QQQEQQEGQP AEMAQRHRTG AGANGGGAGR GAASPQ*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
