 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.8NG046200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRAS |
| Protein Properties |
Length: 477aa MW: 53168.8 Da PI: 4.7196 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8NG046200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 217.4 | 7.4e-67 | 111 | 474 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86
+lLl+ Aeav++gd +la+ + ++l e+ + +++++ Rla +f ++L++r+++ +++p+ + ++ ++s +++++++ +e
Pavir.8NG046200.1.p 111 SDLLLTGAEAVEAGDSSLASVVFSKLDEIlpvtfENAAASSFDRLAYHFFQGLQSRMSG------ASFPCYPPEP-EQSGTMSVHQMIQE 193
689*************************987665666778*******************......6777777764.4566779999**** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
+sP++kf+h+taNqaIl+a++g++ vHiiDf++s+G+QW +L+ La + g s+ +T++ +s+++ ++ ++ La+fAe+l++pf
Pavir.8NG046200.1.p 194 LSPFVKFTHFTANQAILDATSGDTDVHIIDFNLSEGIQWSSLMSDLARQ--GGKSFHLTAILVDPDDSNNTHHTAARCLAEFAESLNLPF 281
***********************************************85..567999****99555677777777788************ PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnse......sFlerfle 259
+++ l +++ ed+ e+++ +++ +++V++ +l +s s + +L++vk+l+Pk+vv++e+e ++ ++e sF+e f+e
Pavir.8NG046200.1.p 282 QYSSLCMHNKEDM--EDFSRNREGSMVVSCDT--TNLCYKSWSKLQ--MLLLSCVKNLQPKLVVIIEEElVKIGKEvsiphsSFVEFFFE 365
****977766665..99*9999********98..455544444444..79******************96333555666666******** PP
GRAS 260 aleyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
al++++++f+sl++ +++ + + vEr ++g++i++ v + + + + + + GF + ls+++ +qa++l+ ++ +
Pavir.8NG046200.1.p 366 ALHHFTMVFESLASCFSTSNnsVCLRLVERDMVGPKIQDFVGQYRSV--ALG---APPPK--DLEGFMSSDLSTRNIAQARMLVGLFN-R 447
************988776664467899**************988776..222...22222..568***********************.6 PP
GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
+ v +e+g l l+Wk+rpL+svS+W+
Pavir.8NG046200.1.p 448 SFGVTHEKGRLQLCWKSRPLISVSVWT 474
6*************************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 477 aa
Download sequence Send
to blast |
METMSYPCSP LLSFPIHEES SYSLWSPQLA HHENSSIDSS NTHGHENSSA FPYFREDCEF 60
FDTTAIDSSD THGQNAFHVD VFTHCPERLL QKESGNLVTI QEELMEENSL SDLLLTGAEA 120
VEAGDSSLAS VVFSKLDEIL PVTFENAAAS SFDRLAYHFF QGLQSRMSGA SFPCYPPEPE 180
QSGTMSVHQM IQELSPFVKF THFTANQAIL DATSGDTDVH IIDFNLSEGI QWSSLMSDLA 240
RQGGKSFHLT AILVDPDDSN NTHHTAARCL AEFAESLNLP FQYSSLCMHN KEDMEDFSRN 300
REGSMVVSCD TTNLCYKSWS KLQMLLLSCV KNLQPKLVVI IEEELVKIGK EVSIPHSSFV 360
EFFFEALHHF TMVFESLASC FSTSNNSVCL RLVERDMVGP KIQDFVGQYR SVALGAPPPK 420
DLEGFMSSDL STRNIAQARM LVGLFNRSFG VTHEKGRLQL CWKSRPLISV SVWTPV*
|
