PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG018500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 41416.3 Da PI: 6.9479 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.7e-51 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk Pavir.8NG018500.1.p 11 LPAGFRFHPTDEELIVHYLMNQASSLPCPV-PIIAEVNIYQCNPWDLPAKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDK 99 799***************************.88***************8877899*********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l + ++e++g+kk Lvfy g+ pkg+ktdW+mheyrl Pavir.8NG018500.1.p 100 AILLTpTSENIGVKKALVFYGGKPPKGVKTDWIMHEYRL 138 **99889999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-63 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.144 | 11 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MPSATSRLPN LPAGFRFHPT DEELIVHYLM NQASSLPCPV PIIAEVNIYQ CNPWDLPAKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKA ILLTPTSENI GVKKALVFYG 120 GKPPKGVKTD WIMHEYRLTG ANKTTKRRGS SMRLDDWVLC RIHKKSNNFQ FSDKDQEGST 180 VEEEESLNNN MMNGTIAASP KSEANDDHDH QFHPTTMTMT MSKSYSITDL LNTIDYSALS 240 QLLDAPAEPE PPLIYPTTTQ THESLLNYNN NSHYFNLPQV DACSDHVAPN CNGLKRKRVM 300 TMDGAESSAL DGSSSSNFSR KLKLPSDSIR SSSHSHFGST TSSYCNQQQL VDRSGFQYSS 360 LLSYPFLEMQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-73 | 10 | 170 | 14 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1824 | 0.0 | callus| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG018500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN673545 | 0.0 | JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809798.1 | 0.0 | NAC domain-containing protein 67-like | ||||
Swissprot | K4BWV2 | 3e-82 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A2T7CJJ9 | 0.0 | A0A2T7CJJ9_9POAL; Uncharacterized protein | ||||
STRING | Si026530m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-82 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG018500.1.p |
Publications ? help Back to Top | |||
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