PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG018400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 387aa    MW: 41963.9 Da    PI: 8.4061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG018400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53161491129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee+++ yL +k  + +++  ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+
  Pavir.8NG018400.1.p  16 LPPGFRFHPTDEEVITSYLLQKFLNPSFDP-RAIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKDGYWKATGKDR 104
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++       ++elvg+kktLvfy grap+g+kt+Wvmhe+rle
  Pavir.8NG018400.1.p 105 EIFKPaaaggaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 149
                          ****99998888888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6112175IPR003441NAC domain
PROSITE profilePS5100556.50616175IPR003441NAC domain
PfamPF023654.0E-2717148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVERSVKSEQ GGDLFLPPGF RFHPTDEEVI TSYLLQKFLN PSFDPRAIGE VDLNKCEPWD  60
LPSKAKMGEK EWYFFCHKDM KYPTGMRTNR ATKDGYWKAT GKDREIFKPA AAGGAGRELV  120
GMKKTLVFYM GRAPRGSKTN WVMHEFRLEG KSRHNNVNLR FNPKDEWVVC KVHHKNGEAS  180
IKKPAEEYSS GTPNVSSVVS DDAGEGGDDQ FLDSSMINPM YFNSAASLPS TTMTINAAPL  240
HNADYSSIFS TAAGATTTTR SSFVDLPNYG LNDVASYNLQ QQVAVANSAA STNNSGSYSS  300
LWNMLINADH NQAMGSYNLH PQAIVAKALG GNYFAGGLPS SSVTGILQHN SQGVPQQKLG  360
NNYGDSSTAA IGPAATKNLG APSGRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511418015170NO APICAL MERISTEM PROTEIN
1ut4_B2e-511418015170NO APICAL MERISTEM PROTEIN
1ut7_A2e-511418015170NO APICAL MERISTEM PROTEIN
1ut7_B2e-511418015170NO APICAL MERISTEM PROTEIN
3swm_A2e-511418018173NAC domain-containing protein 19
3swm_B2e-511418018173NAC domain-containing protein 19
3swm_C2e-511418018173NAC domain-containing protein 19
3swm_D2e-511418018173NAC domain-containing protein 19
3swp_A2e-511418018173NAC domain-containing protein 19
3swp_B2e-511418018173NAC domain-containing protein 19
3swp_C2e-511418018173NAC domain-containing protein 19
3swp_D2e-511418018173NAC domain-containing protein 19
4dul_A2e-511418015170NAC domain-containing protein 19
4dul_B2e-511418015170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.262290.0callus| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG018400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808112.10.0NAC domain-containing protein 45-like
SwissprotQ5CD171e-111NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A3L6PH650.0A0A3L6PH65_PANMI; NAC domain-containing protein 77-like
STRINGPavir.J39049.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-82Arabidopsis NAC domain containing protein 87