 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.8NG005100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 312aa MW: 34664.9 Da PI: 6.7247 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.8NG005100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 99.2 | 2.8e-31 | 79 | 132 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtpeLH++F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+
Pavir.8NG005100.1.p 79 PRLRWTPELHHCFLRAVDRLGGQHRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 132
9****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MEGSSKDLEY YSSATTDHQL QSSEDAAAAA AAADDPHDGS TSNNSSTVEL DEAGAGDSSR 60
RKTAASPSSV RPYVRSKNPR LRWTPELHHC FLRAVDRLGG QHRATPKLVL QLMNVKGLSI 120
GHVKSHLQMY RSKKIDDSGQ VISWRDDHQS QERGQVYNLG HLSLHHGQTG ATLLSARFGA 180
WPHWNNFHQP YWLHGHHVLG SKPYYYSSAA EADPFLGTRA QSVTGASILQ GCSSYQNDRS 240
TDNQIRLLRD EENNNDPLDL ELTLDIGPRR DKRIKRSRSS WGREDEENVD RDQEVESATD 300
TGLSLSFFSS P*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 1e-17 | 80 | 134 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-17 | 80 | 134 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-17 | 80 | 134 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-17 | 80 | 134 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT068440 | 1e-85 | BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds. |
