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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.8NG004600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
LBD |
Protein Properties |
Length: 202aa MW: 21685.7 Da PI: 8.094 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.8NG004600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 143.2 | 8.2e-45 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql
Pavir.8NG004600.1.p 14 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQL 103
7***************************************************************************************** PP
DUF260 91 kaelallkee 100
+ +lal+k+e
Pavir.8NG004600.1.p 104 QMQLALAKAE 113
******9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MAGPGSGSSS GSSPCASCKL LRRRCTQECV FAPYFPPEDP HKFAIVHKVF GASNVSKMLQ 60 ELPAQQRADA VSSLVYEANA RMRDPVYGCV GAISYLQQQV SQLQMQLALA KAEILCVQMQ 120 HRAHATASPP SSPPSQQHHI MESEAYVSSL LVQNTLMNSS AAHHHHHQQQ MVGSSLGSSG 180 STAITAIMLQ EACLKKESLW A*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP100852 | 1e-109 | FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence. |