PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG001600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 276aa MW: 30322.7 Da PI: 6.9411 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.2 | 9.4e-20 | 116 | 184 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.........EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.........veitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r+++ ++ +++Y geH+++ Pavir.8NG001600.1.p 116 DGYQWRKYGQKQIEGAMYARSYYRCTWSteqGCPAKRTVQRNDDGDDIhggggapaeYTVVYMGEHTCT 184 9************************9877789**********964443222222222578888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-23 | 108 | 184 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-20 | 109 | 184 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-26 | 114 | 185 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.119 | 116 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-23 | 116 | 183 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MTLLAGLQQG DDELLTHGDE LLIILQSPMT TTMTPVVNNK VDDDQSGDGR RRRRPLGRSK 60 MRARRPQDDS KSSYNGEQRE DHRHSCKRSR KNNKQRHKMM SGAATSVVIT SVPDLDGYQW 120 RKYGQKQIEG AMYARSYYRC TWSTEQGCPA KRTVQRNDDG DDIHGGGGAP AEYTVVYMGE 180 HTCTPNDSME APFILETTAA AAFPVTSAGG SCRSSTSTTT SWAPAPAAAS SLQELEDFTG 240 PIRSPVHIAA ADGWTIDHFL LLQLANDQPV SYFSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-15 | 105 | 183 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG001600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058620 | 4e-82 | KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808246.1 | 3e-77 | probable WRKY transcription factor 65 isoform X1 | ||||
TrEMBL | A0A2T7E4I1 | 2e-83 | A0A2T7E4I1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J12092.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-15 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG001600.1.p |